Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3079

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265905 to 270528 11446 mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270913 to 272289 11447 mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272562 to 274087 11448

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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269,922 - 11446 mRNA_3078 0.87 1.0
269,924 - 11446 mRNA_3078 0.87 0.1
269,982 + 11446 mRNA_3078 0.88 -0.8
270,119 + 0.9
270,132 - 0.9
270,172 - -0.8
270,278 + 1.1
270,280 + 0.1
270,282 - -0.5
270,407 - 1.1
270,407 - -2.0
270,407 - 0.3
270,415 - -0.7
270,538 + -0.7
270,558 + 0.2
270,569 - 1.1
270,578 + -0.2
270,579 + -1.2
270,700 - 0.2
270,701 - -0.3
270,701 - -0.0
270,711 + 0.8
270,717 + 0.2
270,721 - 0.4
270,728 - 0.5
270,732 + 0.1
270,857 - 1.9
270,859 - 2.1
270,890 + 1.0
271,039 - 0.1
271,163 - 11447 mRNA_3079 0.18 0.4
271,182 - 11447 mRNA_3079 0.20 -0.2
271,327 + 11447 mRNA_3079 0.30 -1.0
271,423 - 11447 mRNA_3079 0.37 1.9
271,488 + 11447 mRNA_3079 0.42 -0.5
271,602 - 11447 mRNA_3079 0.50 1.4
271,625 + 11447 mRNA_3079 0.52 0.3
271,650 - 11447 mRNA_3079 0.54 0.4
271,669 - 11447 mRNA_3079 0.55 -0.5
271,710 - 11447 mRNA_3079 0.58 1.4
271,710 - 11447 mRNA_3079 0.58 0.4
271,757 - 11447 mRNA_3079 0.61 -0.2
271,906 + 11447 mRNA_3079 0.72 0.0
271,953 + 11447 mRNA_3079 0.76 -0.1
272,120 - 11447 mRNA_3079 0.88 2.8
272,174 + 0.2
272,189 + 0.2
272,331 + -0.4
272,339 + 1.2
272,466 - 0.3
272,493 - -1.9
272,581 + 0.0
272,620 - -1.1
272,903 - 11448 mRNA_3080 0.22 1.5
273,232 - 11448 mRNA_3080 0.44 2.7