Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3075

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250206 to 251968 11442 mRNA_3075: 11443 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 252187 to 260484 11443

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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251,443 - 11442 mRNA_3074 0.70 0.4
251,570 - 11442 mRNA_3074 0.77 0.4
251,577 + 11442 mRNA_3074 0.78 0.7
251,720 + 11442 mRNA_3074 0.86 0.2
251,734 - 11442 mRNA_3074 0.87 2.7
251,738 + 11442 mRNA_3074 0.87 0.2
251,739 + 11442 mRNA_3074 0.87 1.6
251,739 - 11442 mRNA_3074 0.87 2.8
251,761 + 11442 mRNA_3074 0.88 -0.0
251,833 + -1.6
251,853 - -0.1
251,854 + -0.6
251,867 + 0.0
251,869 + 0.3
251,879 + 1.5
251,891 + 1.0
251,896 - 0.5
251,980 - 1.3
251,981 + 1.4
251,988 - 0.7
252,011 + 0.3
252,031 - 0.8
252,043 + -2.9
252,043 + 0.3
252,051 - 0.1
252,054 + 0.8
252,054 + 0.4
252,057 - 0.5
252,073 - 1.5
252,176 - -0.4
252,176 - -1.4
252,205 - 0.3
252,342 + 1.2
252,437 + 0.2
252,453 + 0.7
252,501 + 0.5
252,541 + 0.7
252,647 - 0.0
252,653 + 0.0
252,777 + 0.0
252,914 + -1.2
252,917 + 0.7
253,133 + 11443 mRNA_3075 0.11 -1.5
253,366 - 11443 mRNA_3075 0.14 0.7
253,450 - 11443 mRNA_3075 0.15 -1.1
253,463 - 11443 mRNA_3075 0.15 0.6
253,511 - 11443 mRNA_3075 0.16 -0.6
253,525 + 11443 mRNA_3075 0.16 -1.9
253,538 + 11443 mRNA_3075 0.16 0.1
253,540 - 11443 mRNA_3075 0.16 0.6
253,559 - 11443 mRNA_3075 0.17 1.1
253,605 + 11443 mRNA_3075 0.17 -0.3
253,617 + 11443 mRNA_3075 0.17 -2.0
253,624 + 11443 mRNA_3075 0.17 -0.2
253,636 - 11443 mRNA_3075 0.17 0.1
253,648 - 11443 mRNA_3075 0.18 1.1
253,660 - 11443 mRNA_3075 0.18 0.1
253,709 - 11443 mRNA_3075 0.18 1.0
253,803 - 11443 mRNA_3075 0.19 -0.2
253,906 + 11443 mRNA_3075 0.21 1.3
253,915 + 11443 mRNA_3075 0.21 0.5
253,963 + 11443 mRNA_3075 0.21 1.1
253,971 - 11443 mRNA_3075 0.21 -0.8
254,081 - 11443 mRNA_3075 0.23 0.4
254,085 + 11443 mRNA_3075 0.23 0.9
254,207 + 11443 mRNA_3075 0.24 0.2
254,263 - 11443 mRNA_3075 0.25 -0.3
254,269 + 11443 mRNA_3075 0.25 1.2
254,338 - 11443 mRNA_3075 0.26 0.0
254,372 - 11443 mRNA_3075 0.26 1.0
254,418 - 11443 mRNA_3075 0.27 1.6
254,539 - 11443 mRNA_3075 0.28 0.4
254,585 + 11443 mRNA_3075 0.29 0.8
254,706 + 11443 mRNA_3075 0.30 -0.6
254,710 - 11443 mRNA_3075 0.30 0.6
254,712 + 11443 mRNA_3075 0.30 0.1
254,797 - 11443 mRNA_3075 0.31 0.4
254,868 + 11443 mRNA_3075 0.32 -0.0
254,972 + 11443 mRNA_3075 0.34 -0.1
255,080 + 11443 mRNA_3075 0.35 1.9
255,136 - 11443 mRNA_3075 0.36 -0.3
255,157 + 11443 mRNA_3075 0.36 -0.5
255,295 - 11443 mRNA_3075 0.37 1.1
255,303 + 11443 mRNA_3075 0.38 1.3
255,544 + 11443 mRNA_3075 0.40 2.4
255,585 + 11443 mRNA_3075 0.41 0.1
255,609 - 11443 mRNA_3075 0.41 1.1
255,644 - 11443 mRNA_3075 0.42 0.1
255,685 - 11443 mRNA_3075 0.42 0.6
255,734 - 11443 mRNA_3075 0.43 1.1
255,768 + 11443 mRNA_3075 0.43 0.6
255,834 + 11443 mRNA_3075 0.44 0.2
255,834 + 11443 mRNA_3075 0.44 -0.6
255,920 + 11443 mRNA_3075 0.45 0.6
255,921 - 11443 mRNA_3075 0.45 0.7
255,938 - 11443 mRNA_3075 0.45 -0.3
256,163 + 11443 mRNA_3075 0.48 2.1
256,179 - 11443 mRNA_3075 0.48 -1.3
256,216 - 11443 mRNA_3075 0.49 2.8
256,241 - 11443 mRNA_3075 0.49 0.5
256,280 - 11443 mRNA_3075 0.49 1.1
256,353 - 11443 mRNA_3075 0.50 0.1
256,358 - 11443 mRNA_3075 0.50 0.6
256,369 - 11443 mRNA_3075 0.50 0.7
256,517 + 11443 mRNA_3075 0.52 0.5
256,587 - 11443 mRNA_3075 0.53 0.7
256,692 - 11443 mRNA_3075 0.54 -1.6
256,892 - 11443 mRNA_3075 0.57 1.0
256,940 + 11443 mRNA_3075 0.57 -0.3
257,031 - 11443 mRNA_3075 0.58 0.8
257,050 - 11443 mRNA_3075 0.59 -0.6
257,105 - 11443 mRNA_3075 0.59 0.5
257,195 - 11443 mRNA_3075 0.60 -0.9
257,227 + 11443 mRNA_3075 0.61 1.2
257,346 + 11443 mRNA_3075 0.62 1.1
257,355 + 11443 mRNA_3075 0.62 -0.6
257,484 - 11443 mRNA_3075 0.64 -0.5
257,536 + 11443 mRNA_3075 0.64 -1.4
257,588 + 11443 mRNA_3075 0.65 0.1
257,620 - 11443 mRNA_3075 0.65 0.8
257,638 - 11443 mRNA_3075 0.66 -0.5
257,901 + 11443 mRNA_3075 0.69 0.5
258,000 + 11443 mRNA_3075 0.70 0.7
258,221 - 11443 mRNA_3075 0.73 -0.9
258,430 - 11443 mRNA_3075 0.75 2.1
258,434 - 11443 mRNA_3075 0.75 0.8
258,726 + 11443 mRNA_3075 0.79 0.7
258,750 - 11443 mRNA_3075 0.79 1.5
258,759 - 11443 mRNA_3075 0.79 -0.2
258,764 + 11443 mRNA_3075 0.79 0.7
258,900 - 11443 mRNA_3075 0.81 1.1
258,942 + 11443 mRNA_3075 0.81 0.7
258,989 + 11443 mRNA_3075 0.82 0.0
259,069 + 11443 mRNA_3075 0.83 1.7
259,138 + 11443 mRNA_3075 0.84 1.1
259,160 - 11443 mRNA_3075 0.84 2.9
259,193 + 11443 mRNA_3075 0.84 0.7
259,471 - 11443 mRNA_3075 0.88 1.4
259,474 - 11443 mRNA_3075 0.88 0.9
259,481 + 11443 mRNA_3075 0.88 0.1
259,482 + 11443 mRNA_3075 0.88 0.1
259,497 - 11443 mRNA_3075 0.88 0.6
259,543 + 11443 mRNA_3075 0.89 1.3
259,565 - 11443 mRNA_3075 0.89 -0.5
259,568 + 11443 mRNA_3075 0.89 -0.2
259,671 + 2.8
259,937 - 0.3
259,953 + 1.0
259,964 - -2.2
260,105 - 0.2
260,221 + 0.9
260,273 + -4.4
260,633 - 2.6
260,657 - 0.2
260,796 - 0.3
260,815 + 0.7
260,966 + 0.3
261,095 - 1.4
261,242 - 0.6
261,260 + -2.4
261,261 - 1.2
261,265 + 0.2
261,269 - 0.2
261,390 - 1.2
261,391 + -1.1
261,396 - 0.2
261,400 - -0.3
261,400 - -0.7
261,401 + -0.2
261,412 - -0.0
261,415 + -1.8
261,419 + -0.0
261,420 + 3.3
261,420 - -0.6
261,427 - 0.8
261,427 + -0.3
261,428 - -0.3
261,429 + 0.8
261,432 - 0.0
261,438 - -0.5
261,440 - -0.2
261,440 - 1.2
261,442 - 0.9
261,442 - 1.2
261,443 - 0.3
261,443 - 1.2
261,445 - 0.7
261,449 + -1.9
261,449 + 1.1
261,451 - -0.4
261,454 - -1.2
261,456 - -0.1
261,459 + 0.9
261,478 + 0.4