Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2686

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2686: 11054 - Interpro Fungal potassium channel 0, at 510 to 3087 11054 mRNA_2687: 11055 - K16542 CDK5RAP2 CDK5 regulatory subunit-associated protein 2, at 3683 to 8144 11055

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1 + -0.8
28 + 1.7
28 + 0.3
37 + -0.1
37 + -1.1
38 + -0.4
44 + -0.5
48 - 0.2
49 + 1.6
49 + 0.8
49 + 0.2
49 + -1.8
49 + -0.1
49 + -0.4
49 - -2.7
52 + -0.5
54 - -0.9
54 - 1.3
58 + 2.0
62 + -1.2
70 - -0.0
73 + -0.3
74 - -1.3
74 + 1.3
112 - 0.1
120 - -0.1
138 + 0.3
142 + -0.2
142 + 1.1
142 + 0.7
144 + 0.2
145 - 0.2
147 + 0.8
152 + 1.2
159 + 0.7
159 - -0.1
163 + 1.4
169 - -0.5
170 + -0.9
171 - 0.2
173 + 0.9
175 - -0.8
176 + -1.6
177 + 0.8
183 + -2.8
193 + -0.8
205 + -0.9
231 + -1.7
232 + -1.8
235 - -4.2
252 - 0.0
259 + 2.5
259 + -0.1
259 + 1.4
262 - -0.1
269 + 0.4
273 + 0.4
275 - 2.3
289 + 1.3
299 + 0.4
312 - -1.3
339 + -1.8
352 + -0.6
357 + -1.7
358 + 1.8
368 - -1.7
417 - -1.3
429 + -0.3
434 + 0.3
445 + -0.7
462 + -0.8
462 + 0.3
502 + -1.4
529 - 1.7
540 - -0.3
561 + -0.5
584 + -0.2
584 - 0.4
584 + 0.3
633 + -1.2
636 + -1.2
646 + 0.8
703 - -1.0
736 - -0.0
772 - 11054 mRNA_2686 0.10 1.2
845 - 11054 mRNA_2686 0.13 1.3
871 + 11054 mRNA_2686 0.14 3.0
911 + 11054 mRNA_2686 0.16 0.5
919 - 11054 mRNA_2686 0.16 -2.6
922 + 11054 mRNA_2686 0.16 0.2
937 - 11054 mRNA_2686 0.17 0.6
946 - 11054 mRNA_2686 0.17 -1.4
1,039 + 11054 mRNA_2686 0.21 0.7
1,042 - 11054 mRNA_2686 0.21 2.0
1,056 + 11054 mRNA_2686 0.21 0.6
1,056 + 11054 mRNA_2686 0.21 -1.0
1,059 - 11054 mRNA_2686 0.21 0.2
1,059 - 11054 mRNA_2686 0.21 0.8
1,079 + 11054 mRNA_2686 0.22 0.9
1,089 + 11054 mRNA_2686 0.22 -1.2
1,090 - 11054 mRNA_2686 0.22 -1.5
1,099 - 11054 mRNA_2686 0.23 1.9
1,116 - 11054 mRNA_2686 0.24 0.8
1,219 - 11054 mRNA_2686 0.28 -0.1
1,230 + 11054 mRNA_2686 0.28 -0.6
1,258 - 11054 mRNA_2686 0.29 -1.8
1,270 - 11054 mRNA_2686 0.29 -0.8
1,272 + 11054 mRNA_2686 0.30 -0.0
1,324 + 11054 mRNA_2686 0.32 0.2
1,351 + 11054 mRNA_2686 0.33 -1.3
1,464 + 11054 mRNA_2686 0.37 0.1
1,508 + 11054 mRNA_2686 0.39 1.4
1,514 - 11054 mRNA_2686 0.39 1.1
1,611 + 11054 mRNA_2686 0.43 -0.5
1,642 + 11054 mRNA_2686 0.44 -0.6
1,671 + 11054 mRNA_2686 0.45 -1.7
1,680 + 11054 mRNA_2686 0.45 -0.6
1,683 - 11054 mRNA_2686 0.46 -0.0
1,684 + 11054 mRNA_2686 0.46 -1.8
1,699 + 11054 mRNA_2686 0.46 2.5
1,836 + 11054 mRNA_2686 0.51 -0.7
1,912 + 11054 mRNA_2686 0.54 0.3
1,961 - 11054 mRNA_2686 0.56 0.8
2,068 - 11054 mRNA_2686 0.60 1.2
2,071 - 11054 mRNA_2686 0.61 0.0
2,079 + 11054 mRNA_2686 0.61 -1.4
2,096 - 11054 mRNA_2686 0.62 -0.2
2,112 + 11054 mRNA_2686 0.62 -1.1
2,128 + 11054 mRNA_2686 0.63 -0.2
2,140 + 11054 mRNA_2686 0.63 -0.3
2,141 - 11054 mRNA_2686 0.63 2.3
2,158 + 11054 mRNA_2686 0.64 -0.5
2,196 + 11054 mRNA_2686 0.65 -0.5
2,238 + 11054 mRNA_2686 0.67 1.1
2,250 - 11054 mRNA_2686 0.67 1.6
2,271 + 11054 mRNA_2686 0.68 -0.5
2,404 - 11054 mRNA_2686 0.73 0.8
2,419 + 11054 mRNA_2686 0.74 0.4
2,442 - 11054 mRNA_2686 0.75 -0.2
2,444 - 11054 mRNA_2686 0.75 0.7
2,534 - 11054 mRNA_2686 0.79 -0.1
2,547 - 11054 mRNA_2686 0.79 -1.9
2,564 + 11054 mRNA_2686 0.80 -0.4
2,685 - 11054 mRNA_2686 0.84 -0.4
2,806 + 11054 mRNA_2686 0.89 0.9
2,806 - 11054 mRNA_2686 0.89 -2.1
2,814 - 11054 mRNA_2686 0.89 -0.4
2,938 + 2.2
2,971 + -1.2
2,984 - 1.6
3,056 - 1.2
3,090 + -3.9
3,127 + 0.8
3,135 - 0.8
3,141 + 0.8
3,282 + 0.1
3,380 + -1.6
3,409 - 0.4