Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2573

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2572: 10940 - K13093 HTATSF1 HIV Tat-specific factor 1, at 472476 to 474035 10940 mRNA_2573: 10941 - K03848 ALG6 alpha-1,3-glucosyltransferase, at 474232 to 477732 10941 mRNA_2574: 10942 - K10158 B3GAT3 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3, at 477863 to 478879 10942

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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474,079 - 0.2
474,204 - 0.4
474,360 - 0.1
474,374 - -0.5
474,386 - -1.2
474,392 + -0.9
474,668 - 10941 mRNA_2573 0.12 0.8
474,788 + 10941 mRNA_2573 0.16 -0.5
474,791 - 10941 mRNA_2573 0.16 -0.4
474,808 + 10941 mRNA_2573 0.16 -0.6
474,820 - 10941 mRNA_2573 0.17 0.2
474,836 + 10941 mRNA_2573 0.17 1.6
474,965 - 10941 mRNA_2573 0.21 -0.3
474,982 + 10941 mRNA_2573 0.21 -0.2
474,983 + 10941 mRNA_2573 0.21 -1.6
475,118 - 10941 mRNA_2573 0.25 -0.5
475,124 + 10941 mRNA_2573 0.25 0.4
475,135 + 10941 mRNA_2573 0.26 0.5
475,137 - 10941 mRNA_2573 0.26 -0.1
475,139 + 10941 mRNA_2573 0.26 -0.3
475,139 - 10941 mRNA_2573 0.26 -0.9
475,150 + 10941 mRNA_2573 0.26 0.3
475,178 + 10941 mRNA_2573 0.27 -0.4
475,253 - 10941 mRNA_2573 0.29 1.4
475,270 + 10941 mRNA_2573 0.30 -0.5
475,271 + 10941 mRNA_2573 0.30 1.3
475,287 + 10941 mRNA_2573 0.30 -0.1
475,417 + 10941 mRNA_2573 0.34 -2.6
475,558 + 10941 mRNA_2573 0.38 2.1
475,723 + 10941 mRNA_2573 0.43 0.5
475,861 + 10941 mRNA_2573 0.47 0.2
476,123 - 10941 mRNA_2573 0.54 0.5
476,194 + 10941 mRNA_2573 0.56 2.8
476,430 + 10941 mRNA_2573 0.63 0.7
476,448 - 10941 mRNA_2573 0.63 -0.9
476,460 + 10941 mRNA_2573 0.64 -0.0
476,478 + 10941 mRNA_2573 0.64 1.1
476,652 + 10941 mRNA_2573 0.69 -0.1
476,925 + 10941 mRNA_2573 0.77 0.1
477,467 - 2.7
477,479 + 0.3
477,770 - 0.4
477,793 + 2.1
477,795 + -0.2
477,795 + 2.8
477,810 - -1.0
477,881 - -0.1
477,939 + -0.0
477,966 - 10942 mRNA_2574 0.10 0.1
478,008 + 10942 mRNA_2574 0.14 -0.3
478,075 - 10942 mRNA_2574 0.21 1.4
478,231 + 10942 mRNA_2574 0.36 -1.6
478,239 - 10942 mRNA_2574 0.37 -1.1
478,243 + 10942 mRNA_2574 0.37 0.4
478,243 - 10942 mRNA_2574 0.37 1.5
478,360 + 10942 mRNA_2574 0.49 3.2
478,396 + 10942 mRNA_2574 0.52 2.1