Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2230

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2229: 10597 - HMMPfam-Hsp70 protein-PF00012,PRINTS-70kDa heat shock protein signature-PR00301,ProSitePatterns-Heat shock hsp70 proteins family signature 2.-PS00329,ProSitePatterns-Heat shock hsp70 proteins family signature 3.-PS01036,SUPERFAMILY--SSF100934,SUPERFAMILY--SSF53067, at 416574 to 419223 10597 mRNA_2230: 10598 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 419903 to 421996 10598 mRNA_2231: 10599 - Hypothetical Protein, at 422342 to 422815 10599

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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419,183 - -0.2
420,067 - 0.7
421,196 - 10598 mRNA_2230 0.62 -1.1
422,290 + 0.1