Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2138

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2137: 10505 - Hypothetical Protein, at 155364 to 157707 10505 mRNA_2138: 10506 - HMMPfam-Putative stress-responsive nuclear envelope protein-PF10281, at 157835 to 161101 10506 mRNA_2139: 10507 - K09377 CSRP cysteine and glycine-rich protein, at 161377 to 162483 10507

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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156,977 + 10505 mRNA_2137 0.69 2.5
157,248 + 10505 mRNA_2137 0.80 -0.2
157,542 + 0.6
157,816 + 0.5
157,830 - -0.1
157,835 - -3.5
157,960 - 1.8
158,134 + 2.4
158,137 + 0.1
158,156 - -0.4
158,446 + 10506 mRNA_2138 0.19 0.5
158,534 - 10506 mRNA_2138 0.21 -0.3
158,604 + 10506 mRNA_2138 0.24 1.0
158,626 + 10506 mRNA_2138 0.24 0.8
158,770 + 10506 mRNA_2138 0.29 -0.1
159,066 - 10506 mRNA_2138 0.38 1.4
159,120 - 10506 mRNA_2138 0.39 -0.2
159,151 + 10506 mRNA_2138 0.40 -1.2
159,191 - 10506 mRNA_2138 0.42 2.2
159,795 + 10506 mRNA_2138 0.60 0.5
159,911 + 10506 mRNA_2138 0.64 -0.0
160,199 + 10506 mRNA_2138 0.72 0.0
160,229 + 10506 mRNA_2138 0.73 0.9
160,406 + 10506 mRNA_2138 0.79 0.5
160,626 - 10506 mRNA_2138 0.85 1.0
160,658 - 10506 mRNA_2138 0.86 0.2
160,813 + 0.5
160,851 - 0.3
160,918 + -1.4
161,077 + 1.2
161,109 + -0.3
161,200 - 0.5
161,263 + 0.9
161,273 + 0.6
161,275 - 0.5
161,490 - 10507 mRNA_2139 0.10 -2.0
161,638 + 10507 mRNA_2139 0.24 -0.9
161,736 + 10507 mRNA_2139 0.32 -0.1
161,795 - 10507 mRNA_2139 0.38 0.2