Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1934

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1933: 10301 - Hypothetical Protein, at 545451 to 545690 10301 mRNA_1934: 10302 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 546191 to 548410 10302 mRNA_1935: 10303 - K00654 SPT serine palmitoyltransferase, at 548678 to 550878 10303

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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545,378 + 1.9
545,507 - 10301 mRNA_1933 0.23 1.5
545,522 + 10301 mRNA_1933 0.30 0.7
545,531 + 10301 mRNA_1933 0.33 1.5
545,539 + 10301 mRNA_1933 0.37 0.6
545,627 + 10301 mRNA_1933 0.73 1.5
545,632 + 10301 mRNA_1933 0.75 0.2
545,656 - 10301 mRNA_1933 0.85 0.7
545,677 + 1.3
545,678 + -0.4
545,789 - -0.7
545,801 - 0.7
545,804 - 0.1
545,808 + 0.8
545,808 + 0.0
545,815 - -0.6
545,818 + -0.6
545,819 + -0.4
545,843 + -1.7
545,845 + 0.4
545,846 + 0.9
545,869 - -0.3
545,932 + 1.1
545,965 - -0.1
545,983 + -0.9
545,986 - -1.3
546,008 - 2.0
546,269 - 0.8
546,683 + 10302 mRNA_1934 0.22 0.3
546,687 - 10302 mRNA_1934 0.22 0.9
546,840 - 10302 mRNA_1934 0.29 0.5
546,842 + 10302 mRNA_1934 0.29 -0.5
546,873 - 10302 mRNA_1934 0.31 1.5
547,097 - 10302 mRNA_1934 0.41 0.8
547,106 + 10302 mRNA_1934 0.41 1.9
547,595 - 10302 mRNA_1934 0.63 1.2
547,684 + 10302 mRNA_1934 0.67 1.1
547,713 - 10302 mRNA_1934 0.69 1.7
547,724 - 10302 mRNA_1934 0.69 0.7
548,003 + 10302 mRNA_1934 0.82 -0.4
548,007 - 10302 mRNA_1934 0.82 0.9
548,051 + 10302 mRNA_1934 0.84 0.9
548,162 - 10302 mRNA_1934 0.89 0.1
548,168 - 10302 mRNA_1934 0.89 1.6
548,170 + 10302 mRNA_1934 0.89 -0.8
548,214 + 0.2
548,301 - 1.4
548,304 + 0.5
548,311 - -0.0
548,317 - 0.4
548,322 - -0.3
548,464 - 0.1
548,467 - 0.6
548,472 + 0.2
548,472 + 1.2
548,482 - -1.8
548,585 - 0.2
548,589 + -0.0
548,589 - 0.5
548,591 + 0.8
548,607 + 0.7
548,611 - 0.3
548,613 - 0.0
548,613 + 1.9
548,617 - -0.4
548,618 + -1.3
548,619 + 1.1
548,619 + -0.8