Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1602

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694292 to 695992 9969 mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696270 to 698823 9970 mRNA_1603: 9971 - KOG2948 Predicted metal-binding protein, at 699316 to 700594 9971

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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695,387 - 9969 mRNA_1601 0.64 0.3
695,434 - 9969 mRNA_1601 0.67 -0.5
695,443 + 9969 mRNA_1601 0.68 0.3
695,456 - 9969 mRNA_1601 0.68 -0.1
695,583 + 9969 mRNA_1601 0.76 0.6
695,589 + 9969 mRNA_1601 0.76 -0.3
695,721 - 9969 mRNA_1601 0.84 1.1
695,861 + -0.3
695,864 - -0.9
695,886 - 1.3
695,909 - 0.5
696,056 + 0.5
696,170 - -0.9
696,187 + 0.5
696,303 - -1.9
696,352 - 1.1
696,426 + 2.3
696,513 - -0.3
696,638 + 9970 mRNA_1602 0.14 0.5
696,736 - 9970 mRNA_1602 0.18 1.5
696,744 - 9970 mRNA_1602 0.19 -1.2
697,021 - 9970 mRNA_1602 0.29 0.2
697,079 + 9970 mRNA_1602 0.32 -0.2
697,084 + 9970 mRNA_1602 0.32 1.5
697,199 - 9970 mRNA_1602 0.36 1.1
697,364 - 9970 mRNA_1602 0.43 0.3
697,375 - 9970 mRNA_1602 0.43 -0.1
697,389 - 9970 mRNA_1602 0.44 -1.2
697,392 + 9970 mRNA_1602 0.44 -1.6
697,445 - 9970 mRNA_1602 0.46 2.1
697,660 - 9970 mRNA_1602 0.54 -0.2
697,751 - 9970 mRNA_1602 0.58 0.5
697,984 + 9970 mRNA_1602 0.67 0.2
698,191 - 9970 mRNA_1602 0.75 0.4
698,211 - 9970 mRNA_1602 0.76 0.6
698,368 + 9970 mRNA_1602 0.82 -0.4
698,532 - 9970 mRNA_1602 0.89 0.2
698,655 + -0.5
698,675 - 1.8
698,681 - 0.5
698,924 - -0.2
698,972 - 0.1
698,973 - 0.9
698,975 - 0.8
698,997 - -0.5
699,272 - 1.2