Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1486

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412872 to 413936 9853 mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414021 to 419409 9854 mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420051 to 423071 9855

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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413,277 - 9853 mRNA_1485 0.38 1.4
413,446 - 9853 mRNA_1485 0.54 0.3
413,574 - 9853 mRNA_1485 0.66 2.1
413,645 + 9853 mRNA_1485 0.73 -0.1
413,710 + 9853 mRNA_1485 0.79 -1.0
413,843 - 0.5
413,907 + -0.2
414,189 - 0.2
414,190 + -0.8
414,242 + -1.0
414,471 + 0.9
414,871 - 9854 mRNA_1486 0.16 0.2
415,018 + 9854 mRNA_1486 0.19 0.4
415,042 + 9854 mRNA_1486 0.19 -0.3
415,049 - 9854 mRNA_1486 0.19 -1.2
415,203 + 9854 mRNA_1486 0.22 0.3
415,322 - 9854 mRNA_1486 0.24 -0.1
415,467 - 9854 mRNA_1486 0.27 0.3
415,496 - 9854 mRNA_1486 0.27 0.4
415,509 + 9854 mRNA_1486 0.28 1.1
415,539 + 9854 mRNA_1486 0.28 -0.7
415,545 - 9854 mRNA_1486 0.28 0.3
415,705 - 9854 mRNA_1486 0.31 -0.0
415,912 + 9854 mRNA_1486 0.35 0.9
415,938 - 9854 mRNA_1486 0.36 0.3
415,943 - 9854 mRNA_1486 0.36 0.2
416,025 - 9854 mRNA_1486 0.37 0.5
416,067 + 9854 mRNA_1486 0.38 -0.5
416,215 - 9854 mRNA_1486 0.41 0.6
416,392 + 9854 mRNA_1486 0.44 -0.8
416,529 - 9854 mRNA_1486 0.47 0.4
416,530 + 9854 mRNA_1486 0.47 -0.0
416,690 + 9854 mRNA_1486 0.50 0.1
416,730 - 9854 mRNA_1486 0.50 0.3
416,743 - 9854 mRNA_1486 0.51 0.2
416,754 + 9854 mRNA_1486 0.51 -0.1
417,131 + 9854 mRNA_1486 0.58 -0.2
417,184 + 9854 mRNA_1486 0.59 -0.2
417,268 + 9854 mRNA_1486 0.60 -1.2
417,301 - 9854 mRNA_1486 0.61 1.1
417,366 - 9854 mRNA_1486 0.62 -1.4
417,812 + 9854 mRNA_1486 0.70 1.6
417,931 + 9854 mRNA_1486 0.73 0.7
417,984 + 9854 mRNA_1486 0.74 0.1
418,175 - 9854 mRNA_1486 0.77 0.6
418,283 - 9854 mRNA_1486 0.79 -0.8
418,345 + 9854 mRNA_1486 0.80 -1.2
418,634 - 9854 mRNA_1486 0.86 -0.2
418,790 + 9854 mRNA_1486 0.88 -0.8
418,828 - 9854 mRNA_1486 0.89 0.7
419,060 + 1.6
419,064 - 0.7
419,129 - 0.6
419,222 + -0.2
419,388 - 2.6
419,393 + 0.7
419,479 - 1.6
419,488 + 1.7
419,532 - 1.6
419,537 - 1.5
419,545 + -0.1
419,682 - 0.3
419,702 + 1.8
419,785 + -0.1
419,840 + 0.1