Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1332

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11969 to 15219 9699 mRNA_1332: 9700 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 15782 to 19108 9700

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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15,354 - 0.1
15,355 - 1.4
15,359 + 1.6
15,512 - 1.8
15,519 + 1.8
15,580 + 0.4
15,637 + 0.1
15,648 + 0.7
15,654 - -0.8
15,656 - 0.2
15,657 + -2.5
15,663 - 1.3
15,665 - 1.0
15,665 + 0.7
15,667 + 0.3
15,671 + -2.8
15,683 + -0.2
15,684 + -0.3
15,699 + 1.4
15,713 + 0.6
15,792 - 0.2
15,857 + 1.4
15,996 - 1.3
16,078 + 0.9
16,087 - 1.1
16,089 + 0.9
16,122 + 9700 mRNA_1332 0.10 -1.1
16,280 - 9700 mRNA_1332 0.15 0.4
16,363 - 9700 mRNA_1332 0.17 1.3
16,505 - 9700 mRNA_1332 0.22 -1.6
16,505 - 9700 mRNA_1332 0.22 0.5
16,546 + 9700 mRNA_1332 0.23 1.3
16,581 + 9700 mRNA_1332 0.24 1.8
16,581 + 9700 mRNA_1332 0.24 0.8
16,899 + 9700 mRNA_1332 0.34 2.0
16,980 - 9700 mRNA_1332 0.36 0.9
17,024 - 9700 mRNA_1332 0.37 1.4
17,288 - 9700 mRNA_1332 0.45 -1.0
17,370 - 9700 mRNA_1332 0.48 -0.3
17,548 + 9700 mRNA_1332 0.53 0.1
17,574 - 9700 mRNA_1332 0.54 0.8
17,841 - 9700 mRNA_1332 0.62 0.2
17,865 + 9700 mRNA_1332 0.63 -0.2
17,957 + 9700 mRNA_1332 0.65 0.6
18,002 + 9700 mRNA_1332 0.67 -1.2
18,511 - 9700 mRNA_1332 0.82 -0.9
18,550 - 9700 mRNA_1332 0.83 -1.3
18,573 + 9700 mRNA_1332 0.84 -0.9
18,882 - -0.6
19,111 - -0.6
19,235 - 0.7
19,262 - 0.4
19,291 + -1.2
19,296 - -0.5
19,304 - 0.3
19,406 - 0.3
19,412 - 2.2
19,414 - 2.2
19,420 - -1.6
19,422 + -0.9
19,434 - 0.7
19,442 + 0.5
19,452 + 0.9
19,456 - -0.3
19,461 - 0.4
19,480 - 2.1
19,494 + 2.4
19,495 - 0.3
19,496 + 0.7
19,596 - 1.1
19,625 + 0.8
19,626 + 1.2
19,708 - 0.1
19,769 - -1.2
19,769 - -0.0
19,856 + -1.1
19,859 + 0.8
19,899 - 0.6