Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1223

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1222: 9590 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 682421 to 686506 9590 mRNA_1223: 9591 - PRINTS-Proline rich extensin signature-PR01217, at 687384 to 689890 9591 mRNA_1224: 9592 - BLAST catalytic [Ascochyta rabiei], at 690092 to 691295 9592

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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686,610 - 0.1
686,681 - 0.8
686,734 + 0.2
686,767 + -1.7
686,790 + 1.3
686,826 - 2.1
686,843 - 1.2
686,880 - -0.4
686,885 - -1.2
686,887 - 1.1
686,889 + -0.0
686,900 + 0.6
686,917 + 1.4
686,923 + -0.4
686,954 + -2.2
686,964 - 0.6
686,988 - 1.9
686,988 - -0.3
687,015 - -1.1
687,018 + -0.1
687,029 + 0.9
687,033 + 2.4
687,043 - -3.0
687,046 + 1.3
687,052 + -0.7
687,061 + 0.4
687,064 - -0.2
687,186 - -0.7
687,192 - -0.1
687,214 + -0.9
687,363 + 0.3
687,497 + 1.1
687,639 + 9591 mRNA_1223 0.10 0.1
687,767 + 9591 mRNA_1223 0.15 -0.5
688,125 + 9591 mRNA_1223 0.30 1.3
688,156 - 9591 mRNA_1223 0.31 -0.1
688,341 + 9591 mRNA_1223 0.38 1.6
688,501 + 9591 mRNA_1223 0.45 -0.5
688,908 - 9591 mRNA_1223 0.61 -1.1
689,086 + 9591 mRNA_1223 0.68 0.7
689,807 + 0.9
689,863 - 0.2
689,959 + 0.6
689,968 + 1.0
689,968 - 0.9
689,972 + 0.1
690,032 + -0.2
690,045 + 0.1
690,189 + 1.1
690,304 + 9592 mRNA_1224 0.18 0.1
690,320 + 9592 mRNA_1224 0.19 0.1
690,324 + 9592 mRNA_1224 0.19 1.4
690,457 + 9592 mRNA_1224 0.30 -0.1
690,466 - 9592 mRNA_1224 0.31 -2.2
690,594 - 9592 mRNA_1224 0.42 1.5
690,760 - 9592 mRNA_1224 0.55 0.7