Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_143

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_142: 8510 - HMMPfam-Protein of unknown function (DUF3712)-PF12505, at 343005 to 355699 8510 mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511 mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358360 to 365387 8512

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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355,374 - -0.0
355,403 - 0.5
355,418 - 1.4
355,442 - 0.6
355,531 + 0.6
355,647 + -1.0
355,755 - 0.4
355,785 + 0.7
355,804 + 1.3
356,035 + 2.5
356,179 - 0.5
356,187 - 0.7
356,537 - 8511 mRNA_143 0.21 0.4
356,609 - 8511 mRNA_143 0.25 0.2
356,663 + 8511 mRNA_143 0.28 0.3
356,682 + 8511 mRNA_143 0.29 -0.3
357,702 + 8511 mRNA_143 0.87 0.5
357,818 - 0.3
357,821 - -1.2
357,848 - 2.2
357,851 - 0.2
357,968 + 0.5
357,976 + -1.7
357,977 - 1.8
357,987 - -1.4
357,987 + -0.6
357,994 + -0.6
357,997 - 2.4
358,000 - -1.2
358,000 - -0.1
358,005 - 1.9
358,005 - 0.3
358,006 - -0.5
358,006 + 0.4
358,079 - 1.2
358,123 - 0.9
358,126 - 0.1
358,131 - -0.2
358,133 - -0.1
358,133 - 0.5
358,134 - -1.1
358,141 + -0.8
358,151 + 0.5
358,156 + -1.1
358,157 + 0.2
358,157 + 1.4
358,161 + 1.3
358,254 + 0.2
358,281 - -0.8
358,290 - 0.5
358,314 + 2.0
358,432 - -0.6
358,470 - -0.7
358,513 + -1.5
358,604 - 1.2
358,609 + -1.1
358,627 - -1.5
358,640 + 1.5
358,789 + -0.8