Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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595 + -0.3
609 - -0.9
637 - 0.1
651 + 0.2
654 + -0.1
659 - -0.0
663 + 1.0
672 - 0.2
673 + -0.1
685 + 1.6
725 + 2.5
790 - 1.0
791 + 0.4
798 + -2.3
798 + -1.4
804 - -0.7
821 + 1.8
860 + -1.2
899 - -1.5
916 + 1.7
939 + 0.1
957 + -0.9
975 - 1.6
976 + 1.1
996 - 0.8
1,005 + 0.1
1,005 - -0.2
1,007 - 1.5
1,052 + -0.7
1,058 + 2.4
1,070 + 0.3
1,113 - 0.3
1,115 - 1.7
1,117 + -0.5
1,207 + 0.7
1,257 + -0.1
1,285 - -2.2
1,359 - 0.5
1,422 + -0.1
1,960 + 8369 mRNA_1 0.44 -0.5
2,268 + 8369 mRNA_1 0.79 0.2
2,361 - 8369 mRNA_1 0.89 -3.3
2,441 + -2.4
2,550 + -0.8
2,552 - -1.4
2,564 + 0.3
2,701 + -0.5
2,839 - 0.1
2,853 + -0.1
2,946 - -1.1
3,005 - -1.1
3,125 - -0.3
3,136 + 0.2