Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8392

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8391: 16759 - HMMPfam-Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A-PF12222, at 1101594 to 1103958 16759 mRNA_8392: 16760 - ProSiteProfiles-JmjC domain profile.-PS51184,SMART-A domain family that is part of the cupin metalloenzyme superfamily.-SM00558,SUPERFAMILY--SSF51197, at 1104221 to 1108536 16760 mRNA_8393: 16761 - K12385 NPC1 Niemann-Pick C1 protein, at 1108603 to 1114039 16761

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,103,466 - 16759 mRNA_8391 0.79 -0.3
1,103,475 - 16759 mRNA_8391 0.80 -0.8
1,103,630 - 16759 mRNA_8391 0.86 0.2
1,103,634 - 16759 mRNA_8391 0.86 0.3
1,103,681 + 16759 mRNA_8391 0.88 -0.8
1,103,764 - 0.2
1,104,045 + 1.7
1,104,067 + 0.3
1,104,230 + -1.0
1,104,238 - -0.8
1,104,392 + 0.5
1,104,396 + 0.3
1,104,518 + 0.1
1,105,433 + 16760 mRNA_8392 0.28 -0.4
1,105,914 - 16760 mRNA_8392 0.39 0.9
1,106,187 + 16760 mRNA_8392 0.46 -0.7
1,106,380 + 16760 mRNA_8392 0.50 0.1
1,106,428 + 16760 mRNA_8392 0.51 -0.8
1,106,760 - 16760 mRNA_8392 0.59 0.8
1,106,816 + 16760 mRNA_8392 0.60 -0.5
1,107,194 + 16760 mRNA_8392 0.69 0.1
1,107,475 - 16760 mRNA_8392 0.75 -2.5
1,107,569 - 16760 mRNA_8392 0.78 -0.1
1,107,846 + 16760 mRNA_8392 0.84 3.0
1,107,953 + 16760 mRNA_8392 0.86 -1.1
1,108,266 - 1.7
1,108,281 - -0.1
1,108,324 - -0.3
1,108,584 + -0.1
1,108,596 - -0.0
1,108,607 - 3.2
1,108,735 + 1.2
1,108,805 - 0.5
1,108,824 - 0.7
1,108,861 + 0.5
1,108,899 + 2.4
1,108,963 + 0.8
1,109,035 - 0.8
1,109,106 + 0.0
1,109,148 - 16761 mRNA_8393 0.10 0.8
1,109,169 + 16761 mRNA_8393 0.10 -0.3