Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8237

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8236: 16604 - Interpro Fungal protein of unknown function (DUF1770) 0, at 733012 to 733833 16604 mRNA_8237: 16605 - K04345 PKA protein kinase A, at 734227 to 736264 16605 mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736874 to 737919 16606

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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733,232 - 16604 mRNA_8236 0.27 1.5
733,239 - 16604 mRNA_8236 0.28 0.1
733,659 - 16604 mRNA_8236 0.79 3.2
733,685 - 16604 mRNA_8236 0.82 1.5
733,692 - 16604 mRNA_8236 0.83 0.3
733,692 - 16604 mRNA_8236 0.83 0.3
733,701 + 16604 mRNA_8236 0.84 0.2
733,725 - 16604 mRNA_8236 0.87 0.0
733,835 + 0.3
733,837 + 1.6
734,250 + 1.8
734,251 - 0.7
734,272 + 1.3
734,426 + -0.1
734,459 + 16605 mRNA_8237 0.11 1.6
734,581 + 16605 mRNA_8237 0.17 0.4
734,656 - 16605 mRNA_8237 0.21 2.0
734,679 + 16605 mRNA_8237 0.22 0.7
734,986 + 16605 mRNA_8237 0.37 2.8
735,132 - 16605 mRNA_8237 0.44 2.6
735,566 + 16605 mRNA_8237 0.66 0.9
735,704 + 16605 mRNA_8237 0.72 0.5
735,822 + 16605 mRNA_8237 0.78 0.3
735,983 - 16605 mRNA_8237 0.86 0.7
736,010 - 16605 mRNA_8237 0.87 1.0
736,011 + 16605 mRNA_8237 0.88 2.6
736,019 + 16605 mRNA_8237 0.88 -1.2
736,025 + 16605 mRNA_8237 0.88 -1.1
736,137 - 0.5
736,148 + -2.0
736,169 + 0.8
736,172 - 1.4
736,224 - 1.0
736,309 - -2.4
736,315 + 0.9
736,324 - 1.6
736,329 + 0.1
736,329 - -1.0
736,334 - 1.2
736,350 - 3.0
736,351 + 1.1
736,457 + -0.6
736,479 - -0.3
736,487 - -0.1
736,488 - 1.0
736,488 + 1.1
736,490 - -1.7
736,498 + 0.9
736,500 - 0.3
736,501 - -1.4
736,501 + 0.2
736,502 + 0.4
736,502 + -1.5
736,502 + 0.1
736,503 + -1.7
736,504 - -0.7
736,505 + -3.3
736,505 - 0.9
736,506 - 2.2
736,508 + 0.6
736,510 + 0.6
736,511 - 0.5
736,511 - 0.4
736,544 - -0.7
736,545 + 0.1
736,546 - 0.2
736,566 + 0.2
736,581 + 0.8
736,663 - 0.5
736,675 + -0.4
736,686 + 0.6
736,714 - 0.4
736,714 + -0.4
736,725 - -1.0
736,731 - 0.3
736,745 + 0.2
736,857 - 0.3
736,863 + 0.3
736,866 - -0.9
736,881 + 0.5
737,003 - 16606 mRNA_8238 0.12 0.5
737,004 - 16606 mRNA_8238 0.12 1.5
737,005 + 16606 mRNA_8238 0.13 0.7
737,012 - 16606 mRNA_8238 0.13 -3.1
737,036 - 16606 mRNA_8238 0.15 -0.2