Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7818

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7817: 16185 - KOG0254 Predicted transporter (major facilitator superfamily), at 1135639 to 1138436 16185 mRNA_7818: 16186 - K10865 MRE11 double-strand break repair protein MRE11, at 1138694 to 1141964 16186 mRNA_7819: 16187 - K15015 SLC32A, VGAT solute carrier family 32 (vesicular inhibitory amino acid transporter), at 1142212 to 1144699 16187

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,137,700 - 16185 mRNA_7817 0.74 0.0
1,137,908 - 16185 mRNA_7817 0.81 -0.3
1,138,070 - 16185 mRNA_7817 0.87 0.7
1,138,477 - -3.5
1,138,503 + 0.1
1,138,516 - -0.9
1,138,844 - -0.3
1,138,959 - -0.7
1,139,214 - 16186 mRNA_7818 0.16 0.8
1,139,402 - 16186 mRNA_7818 0.22 -0.7
1,141,732 + -2.9
1,141,973 - -0.0
1,141,976 - -1.2
1,141,977 + 0.1
1,141,988 - 0.7
1,142,070 - 1.1
1,142,079 + 1.5
1,142,212 - 1.7
1,142,397 + -0.1
1,142,507 + 16187 mRNA_7819 0.12 0.3
1,142,529 + 16187 mRNA_7819 0.13 -0.1
1,142,943 + 16187 mRNA_7819 0.29 0.2
1,142,954 + 16187 mRNA_7819 0.30 -0.2
1,142,956 - 16187 mRNA_7819 0.30 -0.1
1,142,956 - 16187 mRNA_7819 0.30 -0.7
1,142,960 - 16187 mRNA_7819 0.30 -0.6