Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7244

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7243: 15611 - Hypothetical Protein, at 1207998 to 1209411 15611 mRNA_7244: 15612 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 1209765 to 1211262 15612 mRNA_7245: 15613 - K17972 NAA20, NAT3 N-terminal acetyltransferase B complex catalytic subunit, at 1211695 to 1212788 15613

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,208,792 + 15611 mRNA_7243 0.56 -0.6
1,209,226 - 15611 mRNA_7243 0.87 -0.1
1,209,233 - 15611 mRNA_7243 0.87 -0.5
1,209,244 + 15611 mRNA_7243 0.88 1.6
1,209,252 + 15611 mRNA_7243 0.89 -0.0
1,209,399 + 2.5
1,209,404 + -0.7
1,209,404 + 1.2
1,209,526 + 1.6
1,209,528 - 0.7
1,209,530 - 0.8
1,209,537 - -0.1
1,209,668 + 0.2
1,209,671 + 0.5
1,209,691 + 1.8
1,209,802 + 0.9
1,209,830 - -0.8
1,209,836 - 0.7
1,209,916 + 15612 mRNA_7244 0.10 0.2
1,209,925 + 15612 mRNA_7244 0.11 0.3
1,209,981 - 15612 mRNA_7244 0.14 2.4
1,210,002 + 15612 mRNA_7244 0.16 -0.0
1,210,130 - 15612 mRNA_7244 0.24 1.0
1,210,139 + 15612 mRNA_7244 0.25 0.7
1,210,269 - 15612 mRNA_7244 0.34 0.8
1,210,368 - 15612 mRNA_7244 0.40 0.4
1,210,409 - 15612 mRNA_7244 0.43 0.0
1,210,416 - 15612 mRNA_7244 0.43 2.7
1,210,857 - 15612 mRNA_7244 0.73 -1.0
1,211,181 + 1.8
1,211,481 + 0.3
1,211,573 + 0.3
1,211,580 - 1.3
1,211,592 + 0.8
1,211,592 + 0.5
1,211,618 - -0.2