Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7182

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7181: 15549 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1064763 to 1065253 15549 mRNA_7182: 15550 - HMMPfam-WD domain, G-beta repeat-PF00400,ProSitePatterns-Trp-Asp (WD) repeats signature.-PS00678,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1065505 to 1067037 15550

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,064,546 - -0.1
1,064,603 - -1.3
1,064,675 - 2.0
1,064,767 - -1.0
1,064,769 + 2.2
1,064,774 + 0.9
1,064,783 + 0.8
1,064,820 - 15549 mRNA_7181 0.12 0.8
1,064,838 + 15549 mRNA_7181 0.15 1.5
1,064,945 + 15549 mRNA_7181 0.37 -0.4
1,064,945 - 15549 mRNA_7181 0.37 0.1
1,064,950 + 15549 mRNA_7181 0.38 -0.5
1,065,034 - 15549 mRNA_7181 0.55 -0.6
1,065,189 - 15549 mRNA_7181 0.87 0.4
1,065,365 + 1.8
1,065,469 + -1.0
1,065,813 + 15550 mRNA_7182 0.20 0.5
1,065,931 + 15550 mRNA_7182 0.28 1.1
1,065,953 - 15550 mRNA_7182 0.29 -0.4
1,066,234 + 15550 mRNA_7182 0.48 1.1
1,066,645 + 15550 mRNA_7182 0.74 0.1
1,066,822 + 15550 mRNA_7182 0.86 0.3
1,066,839 - 15550 mRNA_7182 0.87 3.0
1,066,840 + 15550 mRNA_7182 0.87 1.1
1,067,861 + 0.1
1,067,983 + -0.3
1,068,028 + -0.5