Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6908

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6907: 15275 - K14016 UFD1 ubiquitin fusion degradation protein 1, at 403238 to 404908 15275 mRNA_6908: 15276 - K01907 AACS, acsA acetoacetyl-CoA synthetase, at 405479 to 408297 15276 mRNA_6909: 15277 - K14315 NDC1, TMEM48 nucleoporin NDC1, at 408529 to 411391 15277

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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405,288 + -0.3
405,310 + 0.5
405,310 - -0.9
405,319 + -2.6
405,327 - 0.9
405,341 + -0.4
405,355 - -1.5
405,448 - 1.9
405,452 - 0.5
405,486 - -2.5
405,494 + 0.9
405,738 - 1.2
405,739 + -1.0
406,063 - 15276 mRNA_6908 0.21 0.7
406,328 + 15276 mRNA_6908 0.30 0.7
406,418 - 15276 mRNA_6908 0.33 0.1
406,439 - 15276 mRNA_6908 0.34 0.5
406,765 - 15276 mRNA_6908 0.46 -0.2
406,795 + 15276 mRNA_6908 0.47 2.1
406,911 - 15276 mRNA_6908 0.51 -1.1
407,038 - 15276 mRNA_6908 0.55 1.0
407,058 + 15276 mRNA_6908 0.56 0.1
407,104 - 15276 mRNA_6908 0.58 -0.3
407,329 - 15276 mRNA_6908 0.66 -1.9
407,372 - 15276 mRNA_6908 0.67 2.0
407,506 - 15276 mRNA_6908 0.72 -0.0
407,514 - 15276 mRNA_6908 0.72 -0.5
407,652 + 15276 mRNA_6908 0.77 -0.9
407,803 + 15276 mRNA_6908 0.82 -0.2
408,090 + -0.7
408,206 + 0.4
408,207 - -0.1
408,217 - 2.8
408,223 + -0.1
408,361 - 0.6
408,365 - 0.5
408,366 - 0.3
408,377 - -0.2
408,412 + 2.1
408,413 - -0.8
408,417 - -0.4
408,420 + 0.4
408,420 - 1.9
408,420 - 1.5
408,421 + 0.7
408,455 - -1.4
408,468 + -0.9
408,484 + 0.6
408,489 - 0.6
408,509 - -1.6
408,835 - 15277 mRNA_6909 0.11 -0.0