Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6704

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6703: 15071 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1488338 to 1490366 15071 mRNA_6704: 15072 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1490466 to 1492340 15072 mRNA_6705: 15073 - K11227 PBS2 mitogen-activated protein kinase kinase, at 1492601 to 1495154 15073

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,489,787 - 15071 mRNA_6703 0.71 0.8
1,490,526 - 0.3
1,490,799 - 15072 mRNA_6704 0.18 0.4
1,491,073 + 15072 mRNA_6704 0.32 -0.5
1,491,219 - 15072 mRNA_6704 0.40 0.3
1,491,263 + 15072 mRNA_6704 0.43 0.3
1,491,400 - 15072 mRNA_6704 0.50 0.3
1,491,402 - 15072 mRNA_6704 0.50 0.4
1,491,695 - 15072 mRNA_6704 0.66 -0.1
1,491,712 + 15072 mRNA_6704 0.66 -0.7
1,491,822 - 15072 mRNA_6704 0.72 0.2
1,491,852 + 15072 mRNA_6704 0.74 0.1
1,491,978 - 15072 mRNA_6704 0.81 1.4
1,491,982 - 15072 mRNA_6704 0.81 0.6
1,491,986 + 15072 mRNA_6704 0.81 0.6
1,491,988 - 15072 mRNA_6704 0.81 -0.6
1,492,022 - 15072 mRNA_6704 0.83 0.5
1,492,023 + 15072 mRNA_6704 0.83 1.3
1,492,126 - 15072 mRNA_6704 0.89 -0.3
1,492,235 + -0.1
1,492,300 - -1.6
1,492,308 + 0.9
1,492,372 + 0.1
1,492,426 + -0.2
1,492,578 - 2.2
1,492,581 - 0.2
1,492,598 + 0.9
1,492,614 + -1.6