Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6558

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6557: 14925 - K13566 NIT2 omega-amidase, at 1088789 to 1090275 14925 mRNA_6558: 14926 - HMMPfam-Bacterial signalling protein N terminal repeat-PF03707, at 1090620 to 1093721 14926 mRNA_6559: 14927 - Hypothetical Protein, at 1093766 to 1094365 14927

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,089,638 - 14925 mRNA_6557 0.57 1.0
1,089,638 - 14925 mRNA_6557 0.57 0.6
1,089,873 - 14925 mRNA_6557 0.73 0.0
1,089,929 - 14925 mRNA_6557 0.77 -0.3
1,089,937 + 14925 mRNA_6557 0.77 0.6
1,090,068 + 14925 mRNA_6557 0.86 0.5
1,090,077 + 14925 mRNA_6557 0.87 -0.6
1,090,080 - 14925 mRNA_6557 0.87 -0.2
1,090,092 - 14925 mRNA_6557 0.88 -1.9
1,090,094 + 14925 mRNA_6557 0.88 -0.7
1,090,201 + 0.7
1,090,230 - 0.3
1,090,367 - -0.1
1,090,368 - 0.1
1,090,376 - 1.1
1,090,393 - -0.1
1,090,406 - 0.6
1,090,519 + 0.2
1,090,533 + -0.7
1,090,673 + -0.2
1,090,795 - 1.5
1,090,838 - -0.5
1,090,970 - 14926 mRNA_6558 0.11 -0.9
1,091,112 + 14926 mRNA_6558 0.16 1.0
1,091,201 - 14926 mRNA_6558 0.19 1.1
1,091,233 + 14926 mRNA_6558 0.20 -0.1
1,091,827 - 14926 mRNA_6558 0.39 -0.8
1,091,843 + 14926 mRNA_6558 0.39 -0.5
1,092,120 - 14926 mRNA_6558 0.48 -0.9
1,092,123 - 14926 mRNA_6558 0.48 1.4
1,092,153 + 14926 mRNA_6558 0.49 -1.6
1,092,186 - 14926 mRNA_6558 0.50 -0.8
1,092,483 + 14926 mRNA_6558 0.60 -2.1
1,092,537 + 14926 mRNA_6558 0.62 0.0
1,093,449 + 0.2
1,093,712 + 0.1
1,093,733 - -0.2
1,093,876 + 14927 mRNA_6559 0.18 0.3
1,093,893 - 14927 mRNA_6559 0.21 0.1
1,094,007 + 14927 mRNA_6559 0.40 0.3
1,094,008 - 14927 mRNA_6559 0.40 -0.1
1,094,009 + 14927 mRNA_6559 0.41 0.7
1,094,031 + 14927 mRNA_6559 0.44 0.4
1,094,038 - 14927 mRNA_6559 0.45 0.2
1,094,039 + 14927 mRNA_6559 0.46 1.6
1,094,041 + 14927 mRNA_6559 0.46 2.3
1,094,042 - 14927 mRNA_6559 0.46 1.3
1,094,043 - 14927 mRNA_6559 0.46 0.2
1,094,047 + 14927 mRNA_6559 0.47 0.8
1,094,048 - 14927 mRNA_6559 0.47 -0.7
1,094,052 - 14927 mRNA_6559 0.48 0.6
1,094,052 + 14927 mRNA_6559 0.48 0.6
1,094,052 - 14927 mRNA_6559 0.48 0.9
1,094,058 + 14927 mRNA_6559 0.49 0.7
1,094,062 - 14927 mRNA_6559 0.49 -2.3
1,094,071 + 14927 mRNA_6559 0.51 0.3
1,094,073 + 14927 mRNA_6559 0.51 0.3
1,094,082 + 14927 mRNA_6559 0.53 0.9
1,094,094 - 14927 mRNA_6559 0.55 -0.9
1,094,094 + 14927 mRNA_6559 0.55 -0.1
1,094,100 + 14927 mRNA_6559 0.56 0.2
1,094,128 - 14927 mRNA_6559 0.60 0.3
1,094,144 + 14927 mRNA_6559 0.63 -0.3
1,094,175 - 14927 mRNA_6559 0.68 0.3
1,094,192 + 14927 mRNA_6559 0.71 2.2
1,094,192 + 14927 mRNA_6559 0.71 0.6
1,094,197 - 14927 mRNA_6559 0.72 0.9
1,094,197 - 14927 mRNA_6559 0.72 -0.5
1,094,218 - 14927 mRNA_6559 0.75 1.2
1,094,224 - 14927 mRNA_6559 0.76 0.3
1,094,226 - 14927 mRNA_6559 0.77 0.9
1,094,267 + 14927 mRNA_6559 0.83 -0.5
1,094,327 - -0.4
1,094,334 - 0.1
1,094,344 + -0.8
1,094,346 - -0.3
1,094,346 - 0.1
1,094,346 + -0.1
1,094,354 - 0.4
1,094,359 - -0.7
1,094,371 - -1.3
1,094,380 - -0.9
1,094,383 - -0.2
1,094,389 + 0.6
1,094,393 - -0.5
1,094,395 + -1.4
1,094,412 + 3.3
1,094,422 + 2.5
1,094,463 + 0.3
1,094,494 + 1.2
1,094,497 - 0.2
1,094,518 - 0.4
1,094,532 - 2.3
1,094,533 + -0.1
1,094,561 + -0.6
1,094,569 + 0.4
1,094,572 - -0.1
1,094,601 + 0.6
1,094,628 - 0.7
1,094,634 + 0.1
1,094,641 + -1.2
1,094,655 - 0.3