Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6389

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6388: 14756 - HMMPfam-BRCA1 C Terminus (BRCT) domain-PF00533,ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113, at 693931 to 695622 14756 mRNA_6389: 14757 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 695999 to 699737 14757 mRNA_6390: 14758 - KOG0605 NDR and related serine/threonine kinases, at 700093 to 702768 14758

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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695,746 - 1.5
695,808 - 1.0
695,910 + 0.1
695,918 - 1.6
696,012 - -0.0
696,369 - -0.0
696,685 + 14757 mRNA_6389 0.18 1.3
696,769 + 14757 mRNA_6389 0.21 1.1
696,798 - 14757 mRNA_6389 0.21 0.7
696,823 + 14757 mRNA_6389 0.22 0.1
696,838 + 14757 mRNA_6389 0.22 -0.2
697,052 - 14757 mRNA_6389 0.28 0.7
697,065 - 14757 mRNA_6389 0.29 0.5
697,100 + 14757 mRNA_6389 0.29 1.4
697,503 + 14757 mRNA_6389 0.40 0.2
698,132 + 14757 mRNA_6389 0.57 1.4
698,304 + 14757 mRNA_6389 0.62 0.8
698,324 - 14757 mRNA_6389 0.62 0.8
698,395 + 14757 mRNA_6389 0.64 0.5
698,737 + 14757 mRNA_6389 0.73 0.4
698,847 - 14757 mRNA_6389 0.76 -0.5
699,083 + 14757 mRNA_6389 0.82 0.9
699,198 - 14757 mRNA_6389 0.86 1.8
699,451 + 0.6
699,506 + -0.2
699,517 + -0.6
699,523 - 0.4
699,604 + 1.0
699,619 - -0.4
699,620 + -0.1
700,055 - 0.8
700,203 + -0.2
700,263 + -1.2
700,481 + 14758 mRNA_6390 0.14 0.5
700,506 - 14758 mRNA_6390 0.15 1.1
700,653 - 14758 mRNA_6390 0.21 0.6