Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6374

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6373: 14741 - K03013 RPB5, POLR2E DNA-directed RNA polymerases I, II, and III subunit RPABC1, at 662336 to 663388 14741 mRNA_6374: 14742 - K20464 OSBPL5_8, ORP5_8 oxysterol-binding protein-related protein 5/8, at 663767 to 666324 14742 mRNA_6375: 14743 - K01178 E3.2.1.3 glucoamylase, at 666615 to 668807 14743

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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663,576 + -0.1
663,798 - 1.0
664,174 + 14742 mRNA_6374 0.16 -1.7
664,749 - 14742 mRNA_6374 0.38 0.2
665,042 - 14742 mRNA_6374 0.50 1.6
665,332 - 14742 mRNA_6374 0.61 1.3
665,443 - 14742 mRNA_6374 0.66 0.5
665,473 - 14742 mRNA_6374 0.67 1.1
665,763 + 14742 mRNA_6374 0.78 1.2
665,891 - 14742 mRNA_6374 0.83 1.0
665,899 - 14742 mRNA_6374 0.83 0.1
665,900 - 14742 mRNA_6374 0.83 -0.5
665,910 + 14742 mRNA_6374 0.84 -0.6
665,929 - 14742 mRNA_6374 0.85 0.3
665,939 + 14742 mRNA_6374 0.85 -0.4
666,026 - 14742 mRNA_6374 0.88 0.4
666,042 + 14742 mRNA_6374 0.89 -0.2
666,042 + 14742 mRNA_6374 0.89 1.1
666,045 - 14742 mRNA_6374 0.89 0.1
666,057 - 14742 mRNA_6374 0.90 0.6
666,068 + 14742 mRNA_6374 0.90 1.0
666,069 + 1.0
666,070 - 2.1
666,070 - 0.7
666,072 + 1.8
666,075 + 0.9
666,174 + 0.0
666,203 - -0.3
666,204 + 0.1
666,205 + 3.1
666,208 - 2.5
666,211 - 0.8
666,215 - 0.4
666,220 + 0.2
666,243 - -0.6
666,341 - -0.4
666,349 - 0.0
666,356 + -1.8
666,392 + 0.5
666,666 - 0.3
666,979 + 14743 mRNA_6375 0.17 0.4
667,258 - 14743 mRNA_6375 0.29 0.2
667,264 - 14743 mRNA_6375 0.30 -3.5