Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6254

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6253: 14621 - HMMPfam-FR47-like protein-PF08445,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 360247 to 361370 14621 mRNA_6254: 14622 - K20477 RGP1 RAB6A-GEF complex partner protein 2, at 361772 to 365441 14622 mRNA_6255: 14623 - K01452 E3.5.1.41 chitin deacetylase, at 365616 to 367386 14623

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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361,459 - -0.2
361,467 + 0.7
361,475 + 0.3
361,606 - 1.1
361,606 - -0.5
361,647 + 0.2
361,753 - -0.1
361,896 + 0.0
362,056 + 0.5
362,188 + 14622 mRNA_6254 0.11 0.1
362,343 - 14622 mRNA_6254 0.16 0.3
362,344 + 14622 mRNA_6254 0.16 0.5
362,650 - 14622 mRNA_6254 0.24 -0.5
363,350 - 14622 mRNA_6254 0.43 2.1
363,515 + 14622 mRNA_6254 0.47 0.3
363,917 - 14622 mRNA_6254 0.58 1.2
364,034 - 14622 mRNA_6254 0.62 1.7
364,080 - 14622 mRNA_6254 0.63 -1.5
364,220 + 14622 mRNA_6254 0.67 -0.0
364,517 + 14622 mRNA_6254 0.75 -1.8
364,640 + 14622 mRNA_6254 0.78 0.3
364,964 + 14622 mRNA_6254 0.87 1.8
365,122 - -0.2
365,592 - -0.1
365,837 - 14623 mRNA_6255 0.12 -0.0
366,131 + 14623 mRNA_6255 0.29 0.4
366,274 - 14623 mRNA_6255 0.37 -0.1
366,415 + 14623 mRNA_6255 0.45 0.7