Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6002

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6001: 14369 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 1426118 to 1427755 14369 mRNA_6002: 14370 - KOG4178 Soluble epoxide hydrolase, at 1428080 to 1429229 14370 mRNA_6003: 14371 - K14792 RRP5, PDCD11 rRNA biogenesis protein RRP5, at 1429662 to 1434924 14371

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,427,114 - 14369 mRNA_6001 0.61 -1.0
1,427,329 + 14369 mRNA_6001 0.74 1.7
1,427,395 + 14369 mRNA_6001 0.78 0.4
1,427,419 - 14369 mRNA_6001 0.79 1.8
1,427,502 - 14369 mRNA_6001 0.84 0.7
1,427,520 + 14369 mRNA_6001 0.86 0.3
1,427,556 + 14369 mRNA_6001 0.88 0.3
1,427,632 - -0.9
1,427,685 - 0.5
1,427,686 - 0.7
1,427,687 - -1.3
1,427,691 - 0.1
1,427,694 + 1.5
1,427,783 - -0.4
1,427,832 + -0.7
1,427,854 + -0.6
1,427,970 - 0.1
1,427,974 - -1.4
1,427,979 + 0.8
1,428,125 - -0.7
1,428,128 + 0.4
1,428,132 + 0.6
1,428,294 + 14370 mRNA_6002 0.19 0.4
1,428,447 + 14370 mRNA_6002 0.32 -0.2
1,428,576 + 14370 mRNA_6002 0.43 0.2
1,428,716 - 14370 mRNA_6002 0.55 1.3
1,428,854 - 14370 mRNA_6002 0.67 0.1
1,428,905 + 14370 mRNA_6002 0.72 -1.5
1,429,017 - 14370 mRNA_6002 0.81 1.0
1,429,158 + 0.5
1,429,294 - 0.1
1,429,295 + -0.4
1,429,307 - 0.5
1,429,307 - 1.4
1,429,313 - -0.7
1,429,324 + 0.7
1,429,330 - 0.5
1,429,379 - -1.9
1,429,383 + -0.3
1,429,447 - 0.2
1,429,453 + 1.2
1,429,461 + 0.5
1,429,463 - 0.5
1,429,468 + -0.2
1,429,580 - -1.2
1,429,584 + 0.1