Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5569

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5568: 13936 - Hypothetical Protein, at 396764 to 397075 13936 mRNA_5569: 13937 - BLAST pria protein [Moniliophthora roreri MCA 2997], at 397579 to 399010 13937 mRNA_5570: 13938 - K06067 HDAC1_2 histone deacetylase 1/2, at 399570 to 402274 13938

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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396,619 - 0.6
396,781 + -0.7
396,782 + -0.0
396,927 - 13936 mRNA_5568 0.52 2.0
397,169 - 0.7
397,209 + 0.2
397,220 - 0.1
397,324 - -1.9
397,343 - 1.8
397,346 + -0.6
397,347 + -0.6
397,371 - -0.0
397,465 + -0.1
397,480 - 1.6
397,487 + 1.5
397,496 + -0.1
397,507 - -1.3
397,508 - 0.3
397,510 + 0.5
397,514 - 1.2
397,514 - 2.1
397,524 - 3.2
397,526 - -0.0
397,531 - 1.1
397,533 - 2.4
397,533 - 0.3
397,654 + -0.6
397,659 - 0.7
397,661 - 0.0
397,667 - -0.6
397,669 + 1.0
397,670 + 0.7
397,734 + 13937 mRNA_5569 0.11 1.3
397,786 + 13937 mRNA_5569 0.14 0.8
397,802 - 13937 mRNA_5569 0.16 1.7
397,813 + 13937 mRNA_5569 0.16 -1.1
397,814 - 13937 mRNA_5569 0.16 0.7
397,815 - 13937 mRNA_5569 0.16 1.2
397,815 - 13937 mRNA_5569 0.16 -0.3
397,837 - 13937 mRNA_5569 0.18 -1.1
397,837 + 13937 mRNA_5569 0.18 -1.7
397,855 - 13937 mRNA_5569 0.19 0.4
397,882 - 13937 mRNA_5569 0.21 0.2
397,979 + 13937 mRNA_5569 0.28 -0.1
398,260 - 13937 mRNA_5569 0.48 -1.2
398,269 + 13937 mRNA_5569 0.48 1.2
398,542 - 13937 mRNA_5569 0.67 0.3
398,705 - 13937 mRNA_5569 0.79 1.0
398,859 - 13937 mRNA_5569 0.89 1.1
398,872 - -0.2
398,925 + 0.8
399,269 - 1.9
399,278 - 0.3
399,294 + 1.0
399,294 + 0.9
399,338 + 0.4
399,421 - 0.6
399,425 - 1.0
399,432 - -0.5
399,437 - -0.2
399,446 + -0.7
399,457 - 0.5
399,464 - 1.8