Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5445

Experiments: Dropout Complete

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5445: 13813 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 110701 to 112520 13813 mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113170 to 113689 13814

Fetching data...

Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
remove
109,730 + 0.1
109,756 + -0.5
109,767 + 0.6
109,771 + 1.0
110,048 - -0.6
110,208 + -0.1
110,213 + 0.2
110,385 - -0.4
110,478 - 0.0
110,492 + -0.3
110,527 - 0.4
110,543 + -1.8
110,545 + 0.6
110,561 + 0.5
110,564 + 1.3
110,593 - -0.1
110,598 - -0.1
110,598 - 1.1
110,602 - -0.1
110,616 - 0.4
110,617 - -0.4
110,624 - 0.5
110,624 - -0.2
110,625 + 0.7
110,630 + 0.1
110,632 + -0.1
110,634 - 0.4
110,638 + 0.3
110,779 + 1.8
110,797 - -0.2
110,814 + -0.1
110,937 - 13813 mRNA_5445 0.13 0.4
111,101 - 13813 mRNA_5445 0.22 2.9
111,102 + 13813 mRNA_5445 0.22 -0.2
111,104 - 13813 mRNA_5445 0.22 0.2
111,222 + 13813 mRNA_5445 0.29 -2.3
111,243 - 13813 mRNA_5445 0.30 -0.8
111,334 - 13813 mRNA_5445 0.35 1.1
111,795 - 13813 mRNA_5445 0.60 -2.4
112,102 - 13813 mRNA_5445 0.77 0.5
112,107 - 13813 mRNA_5445 0.77 0.2
112,283 + 13813 mRNA_5445 0.87 -0.4
112,286 - 13813 mRNA_5445 0.87 -0.0
112,504 + 0.6
112,518 - -0.8
112,536 - -1.5
112,597 - 0.8
112,668 + 2.2
112,833 - -0.1
112,834 - -0.0
112,845 - 0.5
112,873 + 0.5
112,893 + -2.1
112,981 - 1.1
112,996 - 0.6
113,026 - -0.4