Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5289

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5288: 13656 - HMMPfam-Complex I intermediate-associated protein 30 (CIA30)-PF08547,SUPERFAMILY--SSF49785, at 362943 to 363833 13656 mRNA_5289: 13657 - K00344 qor, CRYZ NADPH2-quinone reductase, at 363937 to 365504 13657 mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365926 to 369880 13658

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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362,962 + 0.9
363,068 - 13656 mRNA_5288 0.14 1.2
363,113 + 13656 mRNA_5288 0.19 0.1
363,197 - 13656 mRNA_5288 0.29 0.1
363,574 + 13656 mRNA_5288 0.71 0.9
363,655 + 13656 mRNA_5288 0.80 1.2
363,716 - 13656 mRNA_5288 0.87 0.5
363,766 + 0.4
364,061 - 2.5
364,259 + 13657 mRNA_5289 0.21 1.2
364,403 + 13657 mRNA_5289 0.30 0.4
364,518 + 13657 mRNA_5289 0.37 0.2
364,645 - 13657 mRNA_5289 0.45 2.8
364,860 + 13657 mRNA_5289 0.59 2.5
364,965 - 13657 mRNA_5289 0.66 0.1
365,130 + 13657 mRNA_5289 0.76 0.6
365,141 - 13657 mRNA_5289 0.77 0.8
365,286 - 13657 mRNA_5289 0.86 -0.6
365,368 - -0.7
365,385 + 1.7
365,404 - 0.8
365,474 - 0.6
365,710 - 0.5
365,714 + -0.2
365,733 + 1.7
365,865 + -0.2
365,890 - -0.4
365,936 - 1.3
365,976 + 0.2
366,004 + 0.3
366,146 - -0.7
366,151 + 2.2
366,159 - -0.7
366,168 + 1.2
366,172 + 0.5
366,351 + 13658 mRNA_5290 0.11 -0.6