Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5233

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218691 to 220745 13600 mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221714 to 224141 13601 mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224900 to 226337 13602

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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220,761 + -0.1
220,803 + -0.4
220,809 + 0.6
220,811 - 0.8
220,937 - 2.1
220,942 - 1.0
220,948 + 1.3
220,965 - 1.1
220,965 + 0.1
220,991 + -0.4
220,993 - -1.7
221,027 + -0.9
221,043 - 0.5
221,044 + 0.6
221,062 - 0.6
221,062 - 0.0
221,064 - -0.4
221,072 - -0.4
221,075 - -0.1
221,081 - 1.4
221,094 + -0.3
221,100 - 0.2
221,101 + -0.8
221,102 - 2.3
221,103 + -0.5
221,105 + 0.8
221,106 - -1.6
221,107 + -0.5
221,123 + 1.6
221,136 + 0.7
221,145 - 1.1
221,146 + 0.3
221,152 + 1.1
221,171 + -1.3
221,179 + 3.0
221,191 - 0.8
221,203 - 0.8
221,204 - -0.1
221,217 + 1.1
221,217 - -0.6
221,219 - 0.9
221,249 + 2.6
221,253 - -1.1
221,253 - 1.1
221,295 + -0.6
221,310 - -1.2
221,318 + -0.3
221,350 + 0.5
221,362 + 0.5
221,368 - 2.9
221,370 + 0.7
221,380 + -0.7
221,381 + -0.7
221,396 + -0.5
221,398 - -0.3
221,398 + -2.5
221,405 + 0.6
221,405 + 0.4
221,411 - 1.4
221,411 + 0.9
221,411 - -0.8
221,412 - 0.7
221,415 + 0.7
221,419 + 0.1
221,419 + 0.4
221,431 + 1.1
221,460 + 0.0
221,465 - -0.2
221,477 - -0.5
221,501 + 1.7
221,508 - -0.0
221,530 + -1.8
221,535 - 1.0
221,535 + -1.6
221,540 - -0.8
221,540 + 0.2
221,540 + 1.2
221,547 + 1.4
221,548 + -0.9
221,552 - -1.7
221,552 + -0.6
221,555 - 1.8
221,555 - 0.5
221,558 + 1.7
221,683 + -0.1
221,707 + 0.1
221,710 + 1.5
221,747 - 0.3
221,805 - -0.2
221,838 - 0.3
221,843 + -0.4
221,850 - 0.7
221,948 - 2.0
222,601 - 13601 mRNA_5233 0.37 0.6
222,723 - 13601 mRNA_5233 0.42 0.1
222,877 - 13601 mRNA_5233 0.48 -1.0
223,488 + 13601 mRNA_5233 0.73 1.2
224,559 - -1.0
224,588 - 0.6
224,730 - 0.6
224,754 - 0.8
224,768 - 0.1
224,771 + -1.2
224,812 - 2.0
224,904 + 1.3
225,024 + 0.2
225,038 + 0.7
225,102 + 13602 mRNA_5234 0.14 0.7