Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5155

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5154: 13522 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SUPERFAMILY--SSF56281, at 28775 to 30256 13522 mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30718 to 32151 13523 mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32964 to 35897 13524

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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29,726 + 13522 mRNA_5154 0.64 0.8
29,881 + 13522 mRNA_5154 0.75 -0.5
30,028 + 13522 mRNA_5154 0.85 -0.9
30,177 + 0.7
30,313 + -0.5
30,512 - 1.2
30,520 - 0.9
30,605 + -0.3
30,735 - 2.2
30,747 + 3.8
30,761 - -0.0
30,794 - 0.9
31,173 - 13523 mRNA_5155 0.32 0.9
31,199 - 13523 mRNA_5155 0.34 1.2
31,333 + 13523 mRNA_5155 0.43 0.1
31,339 - 13523 mRNA_5155 0.43 1.3
31,767 - 13523 mRNA_5155 0.73 0.9
31,933 + 13523 mRNA_5155 0.85 1.5
32,279 - -0.1
32,281 - 0.5
32,367 + 0.2
32,367 + -1.3
32,371 + 2.2
32,375 + 0.4
32,377 - 0.1
32,387 - 0.0
32,387 - 1.9
32,387 - -1.6
32,387 - 3.6
32,395 + 0.5
32,395 + 0.8
32,395 + 0.2
32,395 + 1.3
32,395 + -2.5
32,503 - 1.1
32,554 + 0.4
32,562 + 0.4
32,708 + 0.8
32,710 + 1.3
32,783 + 1.2
32,809 + -0.3
32,835 + 2.1
32,859 + -1.6
32,893 - 1.1
32,898 - -1.1
33,147 - 0.3