Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4096

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4095: 12463 - BLAST Valine--tRNA ligase [Rhizoctonia solani], at 1346768 to 1349335 12463 mRNA_4096: 12464 - BLAST bestrophin domain protein [Rhizoctonia solani AG-3 Rh..., at 1349732 to 1355090 12464 mRNA_4097: 12465 - KOG1339 Aspartyl protease, at 1355805 to 1357462 12465

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,348,845 + 12463 mRNA_4095 0.81 0.6
1,348,857 + 12463 mRNA_4095 0.81 0.4
1,348,885 - 12463 mRNA_4095 0.82 0.8
1,348,945 - 12463 mRNA_4095 0.85 0.1
1,348,989 + 12463 mRNA_4095 0.86 0.5
1,349,166 + -0.2
1,349,191 + -0.8
1,349,277 - 0.7
1,349,284 - -0.7
1,349,318 + -0.2
1,349,452 - -0.6
1,349,618 + 0.8
1,349,629 + 0.5
1,349,689 - -0.4
1,350,026 - -1.4
1,350,077 + 0.6
1,350,113 - -0.1
1,350,175 + 0.2
1,350,325 + 12464 mRNA_4096 0.11 0.1
1,350,325 + 12464 mRNA_4096 0.11 -0.0
1,350,634 - 12464 mRNA_4096 0.17 0.6
1,350,658 - 12464 mRNA_4096 0.17 -0.8
1,350,753 + 12464 mRNA_4096 0.19 0.1
1,350,967 + 12464 mRNA_4096 0.23 1.6
1,351,068 - 12464 mRNA_4096 0.25 1.1
1,351,314 + 12464 mRNA_4096 0.30 -1.7
1,351,522 + 12464 mRNA_4096 0.33 2.6
1,351,806 + 12464 mRNA_4096 0.39 1.5
1,351,810 + 12464 mRNA_4096 0.39 0.3
1,351,822 + 12464 mRNA_4096 0.39 0.2
1,351,947 + 12464 mRNA_4096 0.41 0.3
1,352,380 - 12464 mRNA_4096 0.49 0.5
1,352,388 + 12464 mRNA_4096 0.50 1.7
1,352,413 - 12464 mRNA_4096 0.50 -0.3
1,352,503 - 12464 mRNA_4096 0.52 -2.1
1,352,690 - 12464 mRNA_4096 0.55 -1.9
1,353,255 - 12464 mRNA_4096 0.66 -0.4
1,353,262 + 12464 mRNA_4096 0.66 0.7
1,354,264 + 12464 mRNA_4096 0.85 1.5
1,354,409 + 12464 mRNA_4096 0.87 0.0
1,354,423 + 12464 mRNA_4096 0.88 -0.5
1,354,868 + 2.0
1,354,975 - 0.7
1,354,985 - 2.1
1,355,012 + -0.2
1,355,012 - 0.6
1,355,016 + -0.4
1,355,160 + 0.9
1,355,171 - 1.1
1,355,174 - -1.8
1,355,276 - 1.1
1,355,314 - -0.2
1,355,321 - -1.4
1,355,321 + -0.2
1,355,323 + 0.2
1,355,332 - -1.5
1,355,340 + 2.3
1,355,342 + 0.0
1,355,360 - 0.7
1,355,405 - 0.7
1,355,438 - 2.3
1,355,446 + 0.1
1,355,489 + 0.9
1,355,570 + 0.4
1,355,577 + 0.9
1,355,579 - 0.5
1,355,586 + 0.3
1,355,591 - 0.0
1,355,592 - 1.0
1,355,604 - 0.3
1,355,656 - 0.8
1,355,659 - -0.3
1,355,659 - -0.2
1,355,671 - 0.3
1,355,671 - -0.5
1,355,671 - 1.1
1,355,673 - 1.4
1,355,675 - 0.0
1,355,675 + -0.3
1,355,675 + 0.5
1,355,675 + -1.3
1,355,676 - 0.6
1,355,680 - 2.2
1,355,680 + 0.0
1,355,682 + -1.2
1,355,683 + -0.5
1,355,686 - -0.2
1,355,687 - 2.2
1,355,690 + -2.1
1,355,690 + 1.0
1,355,697 - -1.2
1,355,698 - -0.2
1,355,698 + -0.7
1,355,699 + 0.5
1,355,705 + 0.4
1,355,706 + -0.4
1,355,710 + -0.6
1,355,712 - -1.0
1,355,716 + 0.7
1,355,721 + 0.4
1,355,841 + 0.3
1,355,852 + -3.9
1,355,856 - -0.5
1,355,863 - 0.3
1,355,873 + 0.1
1,355,990 + 12465 mRNA_4097 0.11 1.3