Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4062

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4061: 12429 - SUPERFAMILY--SSF52540, at 1260882 to 1262989 12429 mRNA_4062: 12430 - HMMPfam-Protein of unknown function (DUF1115)-PF06544, at 1263570 to 1264744 12430 mRNA_4063: 12431 - K10777 LIG4, DNL4 DNA ligase 4, at 1264892 to 1269621 12431

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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1,262,698 - 12429 mRNA_4061 0.86 1.3
1,262,727 - 12429 mRNA_4061 0.88 0.9
1,263,228 - -0.4
1,263,249 - 0.4
1,263,253 - -0.9
1,263,255 + -0.2
1,263,259 + -0.4
1,263,262 - -0.4
1,263,267 + 0.6
1,263,267 + -0.5
1,263,275 + 0.8
1,263,278 + -0.4
1,263,286 - 1.4
1,263,288 + 0.7
1,263,297 + -0.1
1,263,319 - 0.1
1,263,367 - -0.2
1,263,433 - 0.9
1,263,437 - 1.1
1,263,623 - -0.1
1,263,638 - 2.3
1,263,763 + 12430 mRNA_4062 0.16 -0.4
1,263,792 + 12430 mRNA_4062 0.19 0.3
1,263,805 + 12430 mRNA_4062 0.20 0.7
1,263,912 - 12430 mRNA_4062 0.29 0.3
1,263,938 + 12430 mRNA_4062 0.31 0.3
1,263,938 + 12430 mRNA_4062 0.31 0.1
1,264,056 - 12430 mRNA_4062 0.41 0.8
1,264,059 + 12430 mRNA_4062 0.42 1.5
1,264,189 - 12430 mRNA_4062 0.53 0.7
1,264,384 + 12430 mRNA_4062 0.69 0.7
1,264,666 + -0.4
1,264,773 - 0.6
1,264,778 - -0.0
1,264,807 + 1.6
1,264,816 + 0.3
1,264,837 - 0.5
1,264,954 + -0.1
1,264,969 - 1.4
1,264,972 - -0.7
1,264,974 - -1.1
1,265,197 - 0.7