Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3928

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3927: 12295 - K10734 GINS3 GINS complex subunit 3, at 921437 to 922417 12295 mRNA_3928: 12296 - HMMPfam-Fungalysin metallopeptidase (M36)-PF02128,HMMPfam-Fungalysin/Thermolysin Propeptide Motif-PF07504,PRINTS-Fungalysin metallopeptidase (M36) signature-PR00999,SUPERFAMILY--SSF55486, at 922643 to 925532 12296 mRNA_3929: 12297 - BLAST TKL/TKL-ccin protein kinase [Mycena chlorophos], at 925744 to 929341 12297

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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922,450 - 0.5
922,468 - 0.6
922,517 + 2.9
922,519 - -2.1
922,522 - 1.1
922,523 - 0.3
922,523 - -0.6
922,542 - -0.9
922,542 + 1.4
922,543 + -0.1
922,562 - -2.2
922,564 + -2.4
922,564 + 1.4
922,564 + 0.1
922,565 - 1.1
922,568 + 1.4
922,569 - 0.4
922,569 - -0.2
922,572 + -0.7
922,573 + 0.8
922,575 + 0.1
922,577 - -0.3
922,579 - 0.5
922,581 + 0.3
922,587 + -0.5
922,587 - 0.5
922,591 + 1.6
922,598 + 0.0
922,607 + 0.6
922,746 - -0.6
922,859 - 0.1
922,905 + 1.5
923,042 - 12296 mRNA_3928 0.14 1.1
923,181 - 12296 mRNA_3928 0.19 -0.7
923,183 + 12296 mRNA_3928 0.19 0.5
923,463 - 12296 mRNA_3928 0.28 0.5
924,349 - 12296 mRNA_3928 0.59 0.4
924,963 + 12296 mRNA_3928 0.80 -0.4
925,369 + 1.6
925,375 - -0.2
925,439 - 1.8
925,488 + 0.8
925,753 - 0.8
925,762 - -0.7
925,770 + -0.5
925,786 - 0.9
925,794 - 0.1
925,796 - -0.0
925,813 - 0.3
925,815 + 0.3
925,824 + -1.1
925,833 + 0.1
925,835 - 0.6
925,838 + 0.8
925,839 - 0.4
925,840 - 0.7
925,841 + 0.8
925,976 - -1.6
926,107 - 12297 mRNA_3929 0.10 0.6
926,131 - 12297 mRNA_3929 0.11 -0.1
926,161 + 12297 mRNA_3929 0.12 0.4
926,322 + 12297 mRNA_3929 0.16 -0.1