Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3617

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3616: 11984 - K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41, at 173211 to 174376 11984 mRNA_3617: 11985 - KOG0254 Predicted transporter (major facilitator superfamily), at 175125 to 177580 11985 mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178257 to 178945 11986

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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174,397 + 0.5
174,411 + -0.6
174,529 - 0.1
174,549 - 1.0
174,563 - 0.0
174,571 + 0.1
174,700 + 0.4
175,006 + 1.2
175,144 - 1.4
175,147 - -0.2
175,409 + 11985 mRNA_3617 0.12 1.0
175,574 + 11985 mRNA_3617 0.18 1.8
176,185 - 11985 mRNA_3617 0.43 0.9
176,477 - 11985 mRNA_3617 0.55 2.2
176,750 + 11985 mRNA_3617 0.66 -0.1
177,363 + 0.1
177,377 - -0.4
177,390 - 0.7
177,498 + 1.2
177,531 + -0.2
177,654 - -0.6
177,654 - 0.8
177,655 - -1.1
177,661 - 0.3
177,661 + 0.2
177,669 - 0.1
177,672 + 0.7
177,673 + 2.0
177,674 + -0.3
177,675 + 1.2
177,680 - -0.2
177,682 - -0.5
177,691 - 0.7
177,696 + -0.5
177,709 - 0.5
177,710 - 0.5
177,711 - -0.7
177,713 - 0.1
177,717 - -0.5
177,727 - 1.3
177,736 - 1.0
177,736 - -0.5
177,737 + -0.2
177,737 - 0.0
177,743 + 1.3
177,752 + 0.3
177,754 + -0.6
177,755 - 0.7
177,759 - 0.7
177,762 - -0.7
177,763 - 1.8
177,771 - 1.6
177,778 + 0.3
177,787 - -1.4
177,787 - 0.5
177,789 - 0.6
177,791 - -0.3
177,797 - 0.9
177,802 + 0.3
177,804 + -1.7
177,833 - 0.5
177,858 + 1.9
177,877 + 1.1
177,883 - 0.5
177,968 - 0.7
177,979 - 0.6
177,981 + 0.6
177,982 - 1.4
178,124 + -0.6
178,158 - 0.2
178,269 + 0.1
178,440 + 11986 mRNA_3618 0.27 0.6
178,539 + 11986 mRNA_3618 0.41 0.7