Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3149

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3148: 11516 - BLAST putative fungal-specific transcription factor [Tricho..., at 429143 to 430117 11516 mRNA_3149: 11517 - K17917 SNX1_2 sorting nexin-1/2, at 430887 to 434419 11517 mRNA_3150: 11518 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 435030 to 436321 11518

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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429,926 - 11516 mRNA_3148 0.80 0.4
430,048 + -0.6
430,050 + 0.3
430,050 + -0.8
430,054 + 1.1
430,090 - -0.0
430,179 - 2.7
430,180 - 1.7
430,181 - 0.3
430,187 + 0.6
430,191 - -0.1
430,192 + -0.1
430,196 + 1.8
430,198 + 1.1
430,208 + 0.4
430,227 + -0.9
430,227 + -1.1
430,286 - -0.1
430,302 - 1.4
430,308 - -0.6
430,309 + -1.1
430,312 - 0.3
430,317 - 0.5
430,321 - 2.0
430,330 - 0.1
430,340 - 1.1
430,382 - -0.2
430,385 + 2.3
430,393 - -0.0
430,427 - 0.0
430,433 + -1.7
430,448 + 0.2
430,454 - -0.1
430,457 + 0.5
430,458 + -1.4
430,471 - 0.5
430,472 - 0.2
430,477 - 0.5
430,478 + -2.2
430,483 + 0.1
430,484 + -0.3
430,484 + 0.4
430,485 + -1.7
430,485 + -1.2
430,486 + 0.9
430,494 - 1.7
430,494 - 1.6
430,497 + -0.7
430,497 + -1.0
430,497 + 1.8
430,500 + -0.2
430,502 + 0.8
430,526 - -1.6
430,534 - -0.1
430,542 - -0.1
430,542 - -0.6
430,543 - 0.3
430,545 - -1.0
430,545 - 0.1
430,546 + -0.7
430,546 + -0.1
430,546 - -0.2
430,553 - 0.2
430,553 - -0.0
430,553 - 1.3
430,555 - 0.1
430,555 - -0.3
430,557 - 0.6
430,557 - -0.9
430,558 + -0.3
430,558 + -1.9
430,561 + 0.9
430,562 + 0.7
430,567 - -0.7
430,569 - 0.2
430,569 + 1.2
430,569 - 2.6
430,573 - -1.0
430,573 - 0.3
430,573 - -0.4
430,575 - 1.4
430,576 + -0.5
430,577 - -0.2
430,577 + 0.8
430,578 + 1.4
430,579 + -1.4
430,584 - 0.7
430,585 - 1.5
430,587 + 0.5
430,588 + -0.4
430,588 - -0.7
430,593 - 0.5
430,594 + -0.0
430,596 - -0.8
430,596 + -1.3
430,597 + 1.1
430,601 - -0.5
430,605 + 0.3
430,605 - 0.4
430,606 + 1.7
430,606 - -0.9
430,609 - -0.6
430,615 + 0.7
430,620 + 1.9
430,622 + 0.2
430,629 - 2.5
430,638 - -0.5
430,640 - 0.1
430,644 + -1.0
430,644 - 2.5
430,645 - 0.1
430,645 + -0.9
430,646 + -0.8
430,657 - 0.7
430,658 + 0.8
430,670 - 0.3
430,685 - 1.2
430,705 + 0.2
430,707 + 1.2
430,714 - -0.8
430,717 + 1.4
430,723 - 0.4
430,729 + 0.6
430,733 - -0.2
430,741 - -0.4
430,743 - -0.8
430,745 - 0.2
430,745 - 0.6
430,745 - 0.5
430,748 - -1.3
430,748 - -0.1
430,748 - 0.4
430,752 - 0.1
430,752 - -0.4
430,769 + -0.2
430,774 + 0.3
430,794 - -0.2
430,806 - 0.5
430,813 + 0.1
430,821 + 3.3
430,826 + 0.8
430,828 + 1.0
430,830 - -0.5
430,832 - -0.3
430,835 + 0.6
430,835 + -0.2
430,836 - -0.3
430,837 + 1.6
430,838 + 0.8
430,845 - -2.2
430,846 - 0.8
430,847 + -1.5
430,849 - 0.2
430,850 + 1.0
430,852 - 2.2
430,852 - -0.4
430,853 - 0.3
430,853 - -0.3
430,857 + 0.8
430,868 - 1.2
430,871 - -1.0
430,872 - -0.0
430,872 + -1.0
430,874 - -0.5
430,874 - 0.5
430,876 + 0.4
430,876 - 0.5
430,877 + -0.6
430,877 + -0.7
430,877 - 0.3
430,881 - 0.3
430,882 + 0.1
430,884 + 0.8
430,887 + -0.1
430,894 - -0.4
430,908 - 0.9
430,909 - 1.5
430,911 - 0.7
430,921 - 0.2
430,923 - 0.7
430,924 + 0.8
430,924 + -1.5
430,928 - -0.8
430,930 - 2.2
430,937 + -1.9
430,938 + -0.4
430,940 + -0.3
430,940 + -1.5
430,941 + 1.0
430,951 + 0.3
430,956 + 0.2
430,962 - 0.1
430,964 - 0.7
430,964 + 2.3
430,964 - -0.2
430,968 - 1.4
430,970 + 0.3
430,974 + 0.9
430,976 + -1.6
430,977 + -0.3
430,978 - 0.4
430,978 - 1.1
430,978 - -0.9
430,979 + 0.9
430,979 + -1.0
430,999 + 0.9
431,003 - -0.2
431,003 - 0.7
431,008 - 2.3
431,010 - -1.2
431,012 - -1.0
431,012 - 0.1
431,016 - 1.0
431,016 - -1.2
431,023 + -0.1
431,024 - 2.0
431,027 - -0.2
431,028 + 0.4
431,029 - -0.8
431,031 - -0.6
431,031 - 0.7
431,032 + -0.9
431,033 - 1.2
431,040 - 0.3
431,041 + -0.7
431,049 + 0.2
431,052 - 0.8
431,052 - -0.8
431,063 - 1.0
431,065 - 0.4
431,066 + 0.8
431,066 + -0.2
431,084 - 0.8
431,087 - 0.4
431,089 + -0.0
431,101 - 0.5
431,110 - 0.9
431,110 + -0.5
431,114 + 0.2
431,120 - -1.5
431,120 + 0.2
431,122 - 2.0
431,143 - 0.5
431,150 - 0.9
431,158 - -0.0
431,159 - 0.4
431,169 - -1.9
431,190 + -0.6
431,193 + 1.0
431,196 - 0.1
431,214 - 0.8
431,237 - -0.3
431,244 + 11517 mRNA_3149 0.10 0.5
431,265 - 11517 mRNA_3149 0.11 -0.0
431,275 + 11517 mRNA_3149 0.11 -0.1
431,285 + 11517 mRNA_3149 0.11 1.1
431,298 - 11517 mRNA_3149 0.12 -0.8
431,310 - 11517 mRNA_3149 0.12 -0.2
431,310 - 11517 mRNA_3149 0.12 0.8
431,322 - 11517 mRNA_3149 0.12 0.5
431,323 - 11517 mRNA_3149 0.12 0.1
431,332 + 11517 mRNA_3149 0.13 -0.7
431,351 + 11517 mRNA_3149 0.13 -2.0
431,376 + 11517 mRNA_3149 0.14 0.6
431,456 - 11517 mRNA_3149 0.16 -0.5
431,471 + 11517 mRNA_3149 0.17 -0.4
431,482 - 11517 mRNA_3149 0.17 0.2
431,487 - 11517 mRNA_3149 0.17 -0.5
431,487 - 11517 mRNA_3149 0.17 0.0
431,516 + 11517 mRNA_3149 0.18 -0.3
431,605 + 11517 mRNA_3149 0.20 1.1
431,608 - 11517 mRNA_3149 0.20 -1.0
431,614 - 11517 mRNA_3149 0.21 -1.1
431,625 - 11517 mRNA_3149 0.21 -0.3
431,626 + 11517 mRNA_3149 0.21 -0.8
431,735 + 11517 mRNA_3149 0.24 1.0
431,765 - 11517 mRNA_3149 0.25 0.8
431,899 - 11517 mRNA_3149 0.29 0.1
431,920 - 11517 mRNA_3149 0.29 0.0
432,051 + 11517 mRNA_3149 0.33 -1.2
432,058 - 11517 mRNA_3149 0.33 -1.6
432,090 - 11517 mRNA_3149 0.34 0.4
432,196 + 11517 mRNA_3149 0.37 1.4
432,310 + 11517 mRNA_3149 0.40 -2.7
432,349 + 11517 mRNA_3149 0.41 -1.2
432,361 + 11517 mRNA_3149 0.42 -0.5
432,471 + 11517 mRNA_3149 0.45 -0.2
432,513 - 11517 mRNA_3149 0.46 -1.4
432,747 - 11517 mRNA_3149 0.53 0.9
432,778 - 11517 mRNA_3149 0.54 0.9
432,788 + 11517 mRNA_3149 0.54 0.3
432,790 - 11517 mRNA_3149 0.54 -0.2
432,800 + 11517 mRNA_3149 0.54 0.3
432,883 - 11517 mRNA_3149 0.56 -0.7
432,886 - 11517 mRNA_3149 0.57 0.5
432,887 + 11517 mRNA_3149 0.57 0.5
432,929 + 11517 mRNA_3149 0.58 0.2
432,945 - 11517 mRNA_3149 0.58 -0.9
432,959 - 11517 mRNA_3149 0.59 3.6
432,969 + 11517 mRNA_3149 0.59 0.2
433,396 + 11517 mRNA_3149 0.71 0.3
433,575 - 11517 mRNA_3149 0.76 0.1
433,800 + 11517 mRNA_3149 0.82 0.9
433,811 - 11517 mRNA_3149 0.83 0.5
433,814 + 11517 mRNA_3149 0.83 0.0
433,814 - 11517 mRNA_3149 0.83 -0.0
434,112 + 0.7
434,119 - 0.4
434,238 - 1.1
434,255 - 1.5
434,278 - 0.0
434,296 - -1.8
434,379 + 0.8
434,393 + 0.2
434,395 + -0.2
434,395 - 0.3
434,399 - 0.5
434,400 - 1.0
434,514 - -0.5
434,518 + 0.7
434,524 + -0.5
434,531 - 0.2
434,541 + -0.6
434,544 + 0.7
434,544 - -2.3
434,644 - -0.3
434,665 + -0.1
434,671 + -0.4
434,672 - -1.8
434,675 - -1.9
434,677 - 0.2
434,689 - -0.7
434,689 + 0.2
434,691 + 0.6
434,694 + -0.1
434,699 + 0.6
434,720 - 0.4
434,757 - 0.9
434,817 - -0.6
434,819 + 0.0
434,836 + 1.5
434,865 + -0.3
434,978 + 0.2
434,983 - -2.1
434,992 + 1.2
434,997 - 1.3
435,105 - -0.8
435,109 - -0.5
435,123 - -0.0
435,407 + 11518 mRNA_3150 0.29 -1.4