Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3114

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3113: 11481 - K11361 SPT20, ADA5 transcription factor SPT20, at 352715 to 353874 11481 mRNA_3114: 11482 - BLAST c6 zinc finger domain containing protein [Diplodia co..., at 354324 to 355899 11482 mRNA_3115: 11483 - Hypothetical Protein, at 356182 to 356910 11483

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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353,347 - 11481 mRNA_3113 0.54 0.1
353,364 + 11481 mRNA_3113 0.56 -1.4
353,502 + 11481 mRNA_3113 0.68 -0.1
353,507 - 11481 mRNA_3113 0.68 0.3
353,537 - 11481 mRNA_3113 0.71 0.3
353,604 + 11481 mRNA_3113 0.77 -1.3
353,668 + 11481 mRNA_3113 0.82 2.0
353,774 - 2.0
353,781 + 0.7
353,783 - 1.4
353,795 - -0.1
353,805 + -0.3
353,967 + -0.5
353,976 + -0.1
354,041 - -1.0
354,076 - 2.3
354,078 - -0.5
354,083 + 1.3
354,087 - 0.4
354,089 + -1.3
354,091 + -0.4
354,094 - 0.4
354,097 + 0.1
354,100 + 0.5
354,101 - -0.2
354,103 + -1.0
354,223 - -0.0
354,248 + -1.0
354,266 + -0.5
354,519 - 11482 mRNA_3114 0.12 -0.9
354,538 + 11482 mRNA_3114 0.14 1.1
354,557 - 11482 mRNA_3114 0.15 1.4
354,670 - 11482 mRNA_3114 0.22 0.7
354,949 + 11482 mRNA_3114 0.40 0.1
355,112 - 11482 mRNA_3114 0.50 -0.1
355,242 + 11482 mRNA_3114 0.58 -1.5
355,382 + 11482 mRNA_3114 0.67 -1.5
355,531 - 11482 mRNA_3114 0.77 0.3
355,534 - 11482 mRNA_3114 0.77 0.9
355,542 - 11482 mRNA_3114 0.77 -3.2
355,547 + 11482 mRNA_3114 0.78 -0.3
355,807 + -0.6
355,826 + -0.2
355,832 + 0.1
355,971 - 0.1
355,978 + -1.1
355,981 + 0.1
355,982 + 1.5
356,010 + 1.9
356,111 - -0.4
356,130 + -0.9
356,131 + 0.6
356,259 - 11483 mRNA_3115 0.11 2.0
356,262 - 11483 mRNA_3115 0.11 1.5
356,282 - 11483 mRNA_3115 0.14 -0.2
356,358 - 11483 mRNA_3115 0.24 1.2
356,415 + 11483 mRNA_3115 0.32 0.2
356,571 + 11483 mRNA_3115 0.53 1.3
356,577 + 11483 mRNA_3115 0.54 0.5
356,579 + 11483 mRNA_3115 0.54 0.2
356,732 - 11483 mRNA_3115 0.75 2.2
356,839 - 0.2