Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3088

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3087: 11455 - HMMPfam-haloacid dehalogenase-like hydrolase-PF12710,SUPERFAMILY--SSF56784,TIGRFAM-HAD-SF-IB HAD phosphoserine phosphatase-like hydrolase, family IB-TIGR01488,TIGRFAM-DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase-TIGR01489, at 289552 to 290619 11455 mRNA_3088: 11456 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 290812 to 293862 11456 mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293855 to 294427 11457

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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289,983 + 11455 mRNA_3087 0.40 0.3
290,096 + 11455 mRNA_3087 0.51 0.5
290,119 + 11455 mRNA_3087 0.53 -1.9
290,295 - 11455 mRNA_3087 0.70 1.8
290,411 - 11455 mRNA_3087 0.80 0.8
290,435 + 11455 mRNA_3087 0.83 1.3
290,443 + 11455 mRNA_3087 0.83 -0.8
290,452 + 11455 mRNA_3087 0.84 0.3
290,542 - -0.7
290,551 + 0.2
290,561 - 0.8
290,565 + -1.2
290,570 - 0.5
290,573 + 0.1
290,576 + 0.1
290,581 + -0.2
290,620 - -0.3
290,622 + -0.3
290,647 - 1.2
290,657 - 1.0
290,659 + 1.3
290,660 + 0.6
290,663 - -0.9
290,665 - -0.4
290,667 + -0.6
290,667 - 0.3
290,676 + 1.5
290,685 + 1.3
290,686 - -0.3
290,686 - 0.1
290,687 - 0.4
290,689 + 0.5
290,689 + 0.4
290,689 + 2.8
290,690 - -0.3
290,693 - 0.6
290,694 + 0.4
290,699 - 0.1
290,706 + 0.7
290,706 + 0.0
290,707 - 0.5
290,711 - 0.2
290,717 + 0.3
290,735 - 1.2
290,742 + -0.2
290,742 + -0.3
290,745 + 0.1
290,839 + -0.0
290,858 + 1.9
290,858 - -0.8
290,866 - 0.1
290,905 - 1.1
290,905 - -0.9
290,910 - -0.1
290,915 + 0.5
291,012 - 0.5
291,027 + -0.6
291,110 + -0.0
291,160 + 11456 mRNA_3088 0.11 1.2
291,310 - 11456 mRNA_3088 0.16 0.2
291,457 + 11456 mRNA_3088 0.21 0.8
291,467 + 11456 mRNA_3088 0.21 -0.4
291,745 + 11456 mRNA_3088 0.31 0.8
291,765 + 11456 mRNA_3088 0.31 1.1
291,896 - 11456 mRNA_3088 0.36 -1.3
291,934 + 11456 mRNA_3088 0.37 0.5
292,218 + 11456 mRNA_3088 0.46 -1.8
292,365 + 11456 mRNA_3088 0.51 -0.6
292,577 - 11456 mRNA_3088 0.58 1.6
292,673 + 11456 mRNA_3088 0.61 1.9
292,916 - 11456 mRNA_3088 0.69 0.3
292,917 + 11456 mRNA_3088 0.69 0.3
293,056 - 11456 mRNA_3088 0.74 1.2
293,073 + 11456 mRNA_3088 0.74 -1.0
293,362 + 11456 mRNA_3088 0.84 0.4
293,477 - 11456 mRNA_3088 0.87 0.5
294,052 - 11457 mRNA_3089 0.34 -0.4
294,064 - 11457 mRNA_3089 0.36 -0.6
294,079 + 11457 mRNA_3089 0.39 1.1
294,167 + 11457 mRNA_3089 0.54 0.8
294,209 - 11457 mRNA_3089 0.62 0.5
294,360 - 11457 mRNA_3089 0.88 1.1
294,390 + -0.6
294,391 - -2.5
294,542 - 0.3
294,550 + -0.7
294,550 - -0.2
294,550 - -0.5
294,557 + 0.2
294,562 + 0.3
294,563 + 1.5
294,564 - 0.1
294,567 - 0.5
294,595 + 0.6
294,596 - 0.9
294,819 - -2.0
294,833 - -0.1
294,847 + -0.2