Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2850

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2849: 11217 - K01611 speD, AMD1 S-adenosylmethionine decarboxylase, at 358278 to 359885 11217 mRNA_2850: 11218 - SUPERFAMILY--SSF52047, at 360186 to 362999 11218 mRNA_2851: 11219 - SUPERFAMILY--SSF52047, at 363401 to 364630 11219

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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359,740 + 0.3
360,076 - -1.3
360,085 - -1.6
360,112 - 0.5
360,248 + 0.2
360,269 - 0.5
360,521 - 11218 mRNA_2850 0.12 -2.5
360,802 - 11218 mRNA_2850 0.22 1.2
360,873 - 11218 mRNA_2850 0.24 1.0
361,030 - 11218 mRNA_2850 0.30 -0.0
361,036 + 11218 mRNA_2850 0.30 1.0
361,138 - 11218 mRNA_2850 0.34 0.3
361,247 + 11218 mRNA_2850 0.38 -0.6
361,277 - 11218 mRNA_2850 0.39 1.9
361,288 - 11218 mRNA_2850 0.39 0.1
361,310 - 11218 mRNA_2850 0.40 0.4
361,425 + 11218 mRNA_2850 0.44 0.3
361,426 + 11218 mRNA_2850 0.44 2.1
361,519 + 11218 mRNA_2850 0.47 1.9
361,569 - 11218 mRNA_2850 0.49 2.1
361,569 + 11218 mRNA_2850 0.49 1.1
361,579 - 11218 mRNA_2850 0.50 0.7
361,733 + 11218 mRNA_2850 0.55 -1.1
361,735 + 11218 mRNA_2850 0.55 1.5
361,738 + 11218 mRNA_2850 0.55 0.7
361,765 - 11218 mRNA_2850 0.56 1.0
361,770 - 11218 mRNA_2850 0.56 1.4
361,891 - 11218 mRNA_2850 0.61 -0.1
362,187 + 11218 mRNA_2850 0.71 -0.3
362,326 - 11218 mRNA_2850 0.76 0.1
362,382 + 11218 mRNA_2850 0.78 -0.0
362,613 + 11218 mRNA_2850 0.86 0.2
362,774 + -0.6
363,004 - 0.2
363,232 + 2.5
363,336 + -1.0
363,337 + 0.9
363,348 - -0.2
363,364 - 0.1
363,564 - 11219 mRNA_2851 0.13 -1.5
363,631 + 11219 mRNA_2851 0.19 -0.1
363,634 + 11219 mRNA_2851 0.19 1.3
363,676 + 11219 mRNA_2851 0.22 0.2