Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2760

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2759: 11127 - K12158 NEDD8 ubiquitin-like protein Nedd8, at 152848 to 153537 11127 mRNA_2760: 11128 - HMMPfam-Acyltransferase-PF01553,SMART-Phosphate acyltransferases-SM00563,SUPERFAMILY--SSF69593, at 153952 to 156416 11128 mRNA_2761: 11129 - K00031 IDH1, IDH2, icd isocitrate dehydrogenase, at 157082 to 158929 11129

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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153,623 - 1.0
153,770 + 1.0
153,772 + 1.0
153,903 - 1.0
153,908 - 0.6
153,914 - 1.0
154,316 - 11128 mRNA_2760 0.15 -0.3
154,509 + 11128 mRNA_2760 0.23 -0.3
154,516 - 11128 mRNA_2760 0.23 -0.3
154,518 + 11128 mRNA_2760 0.23 1.2
154,612 - 11128 mRNA_2760 0.27 1.5
154,944 + 11128 mRNA_2760 0.40 0.4
156,065 - 11128 mRNA_2760 0.86 -0.4
156,107 + 11128 mRNA_2760 0.87 -0.1
156,297 + -0.7
156,368 - 1.6
156,438 - 0.5
156,442 + -0.1
156,473 - -0.3
156,493 - 0.2
156,521 + -0.2
156,535 - -0.6
156,535 + -1.0
156,544 + 3.4
156,555 - 1.0
156,558 - -0.0
156,561 + -0.4
156,561 - -1.0
156,567 - -0.2
156,691 + -1.6
156,838 + 1.3
156,938 - 0.1
156,956 + 2.0
156,976 - -1.4
156,977 + -0.2
156,978 - -2.9
156,984 - -0.9
156,992 + 0.5
156,997 + -1.5
156,999 + -0.9
157,002 - -1.0
157,002 - 0.1
157,007 - 0.2
157,009 + 0.4
157,012 + -2.4
157,029 - -0.1
157,030 + 1.1
157,051 - 0.1
157,173 + 1.1
157,192 + 0.7
157,195 + -1.0
157,203 - -0.6
157,207 + 1.9
157,222 + -0.6
157,308 + 11129 mRNA_2761 0.12 -1.6
157,353 - 11129 mRNA_2761 0.15 -0.8
157,353 - 11129 mRNA_2761 0.15 -0.5
157,379 + 11129 mRNA_2761 0.16 -0.3
157,382 + 11129 mRNA_2761 0.16 1.1
157,385 + 11129 mRNA_2761 0.16 -0.0
157,399 + 11129 mRNA_2761 0.17 -0.3