Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2179

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2179: 10547 - K06681 LTE1 Gdp/GTP exchange factor required for growth at low temperatures, at 268224 to 273308 10547 mRNA_2180: 10548 - KOG0166 Karyopherin (importin) alpha, at 273943 to 276215 10548

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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267,372 - 3.4
267,514 - 0.8
267,523 + 0.8
267,642 - -0.3
267,682 + -0.2
267,714 + -0.6
267,777 + 2.5
267,957 - -1.3
267,965 - 0.5
267,970 + 2.0
267,973 - 1.8
267,976 + 0.1
267,990 + 0.5
268,073 - 0.5
268,307 + -0.3
268,399 - -0.4
268,421 + -1.3
268,684 - 0.7
268,766 - 10547 mRNA_2179 0.11 -1.4
268,873 - 10547 mRNA_2179 0.13 1.9
268,922 + 10547 mRNA_2179 0.14 0.1
268,956 + 10547 mRNA_2179 0.14 -0.6
269,052 + 10547 mRNA_2179 0.16 0.0
269,436 - 10547 mRNA_2179 0.24 0.4
269,682 - 10547 mRNA_2179 0.29 -0.7
269,710 - 10547 mRNA_2179 0.29 -0.2
269,727 - 10547 mRNA_2179 0.30 0.1
270,192 - 10547 mRNA_2179 0.39 1.2
270,345 + 10547 mRNA_2179 0.42 -0.6
270,432 + 10547 mRNA_2179 0.43 1.1
271,142 - 10547 mRNA_2179 0.57 0.6
271,241 - 10547 mRNA_2179 0.59 1.7
271,242 + 10547 mRNA_2179 0.59 0.8
271,986 - 10547 mRNA_2179 0.74 -0.8
272,150 + 10547 mRNA_2179 0.77 -0.6
272,414 + 10547 mRNA_2179 0.82 -0.9
272,818 - -0.1
273,226 - 0.7
273,232 - -0.5
273,263 - 1.8
273,374 - 0.4
273,402 + 0.6
273,529 - 1.5
273,531 - -0.3
273,542 + 0.3
273,560 + 0.8
273,565 - -0.2
273,566 + 1.0
273,846 + 0.8
274,173 - 10548 mRNA_2180 0.10 -1.1
274,231 - 10548 mRNA_2180 0.13 0.7