Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2111

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2110: 10478 - K10277 KDM8, JMJD5 lysine-specific demethylase 8, at 99075 to 100834 10478 mRNA_2111: 10479 - K10575 UBE2G1, UBC7 ubiquitin-conjugating enzyme E2 G1, at 101300 to 102530 10479 mRNA_2112: 10480 - Hypothetical Protein, at 102652 to 103100 10480 mRNA_2113: 10481 - KOG0015 Regulator of arginine metabolism and related MADS box-containing transcription factors, at 103477 to 104004 10481

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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100,366 - 10478 mRNA_2110 0.73 -0.1
100,579 - 10478 mRNA_2110 0.85 0.2
100,641 - 10478 mRNA_2110 0.89 -0.6
101,102 - -0.7
101,113 - 0.6
101,113 - -1.3
101,138 + 0.4
101,141 - -0.1
101,242 - 1.6
101,262 + -3.1
102,137 + 10479 mRNA_2111 0.68 -3.0
102,406 - 10479 mRNA_2111 0.90 0.2
102,563 - 0.7
102,645 - -1.1
102,702 - 10480 mRNA_2112 0.11 0.0
102,753 - 10480 mRNA_2112 0.22 1.8
102,828 - 10480 mRNA_2112 0.39 -1.2
102,957 - 10480 mRNA_2112 0.68 0.1
102,996 - 10480 mRNA_2112 0.77 0.4
102,998 - 10480 mRNA_2112 0.77 0.0
103,015 + 10480 mRNA_2112 0.81 1.4
103,015 + 10480 mRNA_2112 0.81 -1.1
103,024 - 10480 mRNA_2112 0.83 -1.9
103,028 + 10480 mRNA_2112 0.84 -0.5
103,052 - 10480 mRNA_2112 0.89 1.0
103,129 + 0.4
103,166 + 0.4
103,167 - 0.8
103,171 + 0.3
103,171 - -0.1
103,180 + 0.4
103,182 - -0.1
103,313 + 0.3
103,329 - 2.1
103,348 - 0.4
103,413 + 1.7
103,447 - 1.1
103,477 - -0.5