Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2012

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2011: 10379 - KOG2533 Permease of the major facilitator superfamily, at 737348 to 740033 10379 mRNA_2012: 10380 - K00681 ggt gamma-glutamyltranspeptidase / glutathione hydrolase, at 740635 to 742993 10380 mRNA_2013: 10381 - SUPERFAMILY--SSF49899, at 743258 to 744708 10381

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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739,685 + 10379 mRNA_2011 0.87 0.5
739,920 + 0.7
739,924 - -0.0
739,978 - -1.1
740,260 - 1.0
740,261 + -0.1
740,280 - 1.0
740,430 - -0.8
740,433 + 0.4
740,439 - 2.1
740,439 + -0.0
740,443 + 1.4
740,449 + 0.4
740,449 + 0.5
740,454 + 0.6
740,459 + 0.2
740,498 - -0.2
740,504 + 0.4
740,533 + -0.9
740,540 + -2.2
740,558 + 0.8
740,559 + -0.4
740,566 - 0.1
740,569 - -1.8
740,570 - -0.4
740,570 - -1.4
740,571 + -1.1
740,582 + 1.8
740,582 + 0.2
740,612 + -0.7
740,665 + 0.2
740,730 - 0.5
741,012 + 10380 mRNA_2012 0.16 2.3
741,304 - 10380 mRNA_2012 0.28 -0.1
741,309 + 10380 mRNA_2012 0.29 -3.3
741,405 - 10380 mRNA_2012 0.33 0.2
741,480 + 10380 mRNA_2012 0.36 0.1
741,754 + 10380 mRNA_2012 0.47 -0.0
741,786 + 10380 mRNA_2012 0.49 0.3
741,900 + 10380 mRNA_2012 0.54 1.9
742,077 - 10380 mRNA_2012 0.61 1.7
742,310 + 10380 mRNA_2012 0.71 0.6
742,610 + 10380 mRNA_2012 0.84 -1.4
742,852 - 1.9
742,960 + 0.4
743,120 + 1.9
743,382 - 0.6
743,503 - 10381 mRNA_2013 0.17 -0.1