Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1971

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1971: 10339 - K02429 fucP MFS transporter, FHS family, L-fucose permease, at 642692 to 644646 10339 mRNA_1972: 10340 - K20301 TRAPPC2, TRS20 trafficking protein particle complex subunit 2, at 645186 to 645812 10340

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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641,693 - -0.5
641,693 - 0.6
641,698 + -0.6
641,702 + 0.9
641,703 - 0.5
641,707 + -0.5
641,708 + 0.2
641,711 - -0.4
641,763 - -1.3
641,769 + -0.3
641,803 + 1.2
641,815 + -0.6
641,831 - -0.1
641,854 - 0.2
641,865 - -0.2
641,887 - 0.4
641,904 + -0.3
641,908 - 0.3
641,946 - -0.4
641,949 + -0.3
641,971 - 0.8
641,988 + -0.3
641,995 + 0.6
641,996 + -0.8
642,001 + -1.5
642,019 - 1.0
642,026 - -0.4
642,027 - -0.3
642,033 - 1.1
642,037 + 0.8
642,037 - 2.4
642,039 + -1.6
642,049 + 1.4
642,071 + -0.3
642,091 - -1.4
642,092 + 1.6
642,174 - -0.2
642,188 - 0.3
642,189 + 1.0
642,190 + 0.4
642,198 - 0.7
642,204 + -1.6
642,208 + -2.4
642,209 - -0.9
642,217 + 0.5
642,220 + -1.1
642,222 + 0.4
642,229 + 0.9
642,248 - 0.1
642,279 - -1.8
642,294 - -1.0
642,296 - 0.8
642,301 - 0.5
642,307 + 0.5
642,319 + 0.0
642,331 + 1.2
642,339 + 0.1
642,344 - -0.3
642,349 + -1.1
642,359 - 1.3
642,367 - 0.8
642,379 - 0.0
642,381 + -0.5
642,385 + 0.2
642,390 + 1.2
642,393 - 2.9
642,396 + 1.9
642,396 - 0.7
642,407 - -1.4
642,411 - 0.6
642,419 + -0.3
642,426 - 0.7
642,436 - 1.3
642,441 + 0.2
642,445 - 1.1
642,448 - 2.0
642,452 + 0.3
642,453 - 0.8
642,490 + 1.3
642,550 - 0.5
642,579 + 0.2
642,610 - 1.6
642,931 - 10339 mRNA_1971 0.12 0.6
643,292 + 10339 mRNA_1971 0.31 1.2
643,761 - 10339 mRNA_1971 0.55 -0.8
643,783 - 10339 mRNA_1971 0.56 -1.6
644,298 - 10339 mRNA_1971 0.82 0.7
644,317 + 10339 mRNA_1971 0.83 1.0