Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1942

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1941: 10309 - KOG3798 Predicted Zn-dependent hydrolase (beta-lactamase superfamily), at 564207 to 567007 10309 mRNA_1942: 10310 - HMMPfam-PLD-like domain-PF13091,ProSiteProfiles-Phospholipase D phosphodiesterase active site profile.-PS50035,SMART-Phospholipase D. Active site motifs.-SM00155,SUPERFAMILY--SSF56024, at 567440 to 570897 10310 mRNA_1943: 10311 - Hypothetical Protein, at 571138 to 572203 10311

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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566,514 - 10309 mRNA_1941 0.82 -1.2
566,641 - 10309 mRNA_1941 0.87 -2.1
566,650 + 10309 mRNA_1941 0.87 -1.0
566,663 - 10309 mRNA_1941 0.88 0.4
566,689 - 10309 mRNA_1941 0.89 0.1
566,882 - -1.5
566,995 + -0.3
567,101 - 1.3
567,109 - -0.4
567,112 + -0.2
567,232 - 1.0
567,253 + 2.4
567,376 - 0.3
567,399 - 0.1
567,510 + -0.5
567,536 + -0.6
567,546 + 0.1
567,547 + 0.0
567,552 - 1.9
567,699 - -0.5
567,702 + 0.8
568,004 - 10310 mRNA_1942 0.16 1.9
568,465 + 10310 mRNA_1942 0.30 1.2
568,808 - 10310 mRNA_1942 0.40 -1.1
568,809 + 10310 mRNA_1942 0.40 0.5
569,173 + 10310 mRNA_1942 0.50 -1.6
569,194 + 10310 mRNA_1942 0.51 -0.1
569,754 - 10310 mRNA_1942 0.67 -0.4
570,017 + 10310 mRNA_1942 0.75 0.5
570,203 - 10310 mRNA_1942 0.80 0.1
570,702 - -0.5
570,794 - 0.2
570,929 - 0.2
571,211 + -0.5
571,258 + 10311 mRNA_1943 0.11 0.1
571,348 - 10311 mRNA_1943 0.20 -0.9
571,417 - 10311 mRNA_1943 0.26 0.9
571,420 - 10311 mRNA_1943 0.26 -0.8
571,492 - 10311 mRNA_1943 0.33 1.2
571,496 - 10311 mRNA_1943 0.34 -0.9
571,499 + 10311 mRNA_1943 0.34 0.8
571,638 + 10311 mRNA_1943 0.47 -0.5
571,785 - 10311 mRNA_1943 0.61 1.3
571,854 - 10311 mRNA_1943 0.67 0.8