Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1927

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1926: 10294 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 525365 to 527827 10294 mRNA_1927: 10295 - K19691 NIK1, TCSC osomolarity two-component system, sensor histidine kinase NIK1, at 528400 to 533209 10295

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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527,414 + 10294 mRNA_1926 0.83 0.3
527,439 + 10294 mRNA_1926 0.84 -0.4
527,441 - 10294 mRNA_1926 0.84 -0.4
527,463 + 10294 mRNA_1926 0.85 0.4
527,611 - -0.6
527,732 + 0.1
527,735 - -0.0
527,742 + 0.9
527,838 - 0.5
527,851 - -0.4
527,865 - -0.7
527,869 - 1.2
527,889 - -1.3
527,894 + 0.1
527,942 - 1.5
527,945 - -0.9
528,044 - -1.6
528,070 - 0.4
528,086 + 1.2
528,349 - -2.1
528,500 + 0.2
528,597 + -0.1
528,642 - -0.1
528,903 - 10295 mRNA_1927 0.10 0.5
528,935 + 10295 mRNA_1927 0.11 -1.6
529,048 + 10295 mRNA_1927 0.13 -0.9
529,945 - 10295 mRNA_1927 0.32 -1.7
529,953 + 10295 mRNA_1927 0.32 -0.8
529,962 - 10295 mRNA_1927 0.32 0.6
530,126 - 10295 mRNA_1927 0.36 0.7
530,199 - 10295 mRNA_1927 0.37 -2.8
530,266 + 10295 mRNA_1927 0.39 -0.6
530,377 + 10295 mRNA_1927 0.41 -0.9
530,511 - 10295 mRNA_1927 0.44 1.5
530,661 + 10295 mRNA_1927 0.47 0.0
530,804 - 10295 mRNA_1927 0.50 0.4
530,848 + 10295 mRNA_1927 0.51 -0.1
531,254 - 10295 mRNA_1927 0.59 -0.5
531,465 + 10295 mRNA_1927 0.64 0.8
531,554 - 10295 mRNA_1927 0.66 2.4
531,582 + 10295 mRNA_1927 0.66 1.2
531,814 - 10295 mRNA_1927 0.71 0.3
532,420 + 10295 mRNA_1927 0.84 0.8
532,541 - 10295 mRNA_1927 0.86 1.1
532,542 - 10295 mRNA_1927 0.86 -0.5
532,547 + 10295 mRNA_1927 0.86 -2.0
532,838 - 0.3
532,854 + 0.0
532,857 + -0.9
532,980 + -0.2
533,002 - 1.0
533,011 + 0.5
533,013 + -0.2
533,015 - 0.4
533,017 - -0.1
533,138 + 0.3
533,154 - 0.8
533,160 - 0.5
533,173 - 0.5
533,294 + 0.5
533,297 + -2.3
533,299 - -0.2
533,316 - 1.9
533,346 - -0.1
533,439 - 1.2
533,449 - 0.1
533,452 - 1.2
533,460 - -0.9
533,465 + -0.5
533,467 - -0.3
533,471 - 0.2
533,476 - 0.9
533,479 - 0.2
533,577 + 0.3
533,582 - 0.7
533,586 - -0.4
533,590 + 1.1
533,591 + 2.0
533,600 - 1.5
533,615 - -0.4
533,617 - -1.0
533,619 + 0.6
533,621 + 0.7
533,621 + -1.0
533,624 + 2.2
533,628 + -0.8
533,650 - 2.3
533,665 - -0.1
533,671 - 0.9
533,675 + -1.3
533,677 + 0.6
533,677 - 0.9
533,677 - -0.1
533,678 - -0.0
533,680 + 0.3
533,682 - 0.1
533,687 + 0.4
533,696 - 0.3
533,699 - 0.4
533,700 + -0.3
533,701 + 0.1
533,704 + 0.1
533,705 - 0.7
533,717 - 1.5
533,721 - 0.0
533,721 + -0.1
533,722 + 0.1
533,722 + 0.7
533,765 + -0.5
533,783 + 0.7
533,792 + -0.1
533,793 - 0.3
533,814 + -0.4
533,816 - 0.8
533,822 + 1.3
533,828 - -0.1
533,843 + -1.5
533,844 - 1.0
533,855 + 1.5
533,863 + 1.3
533,864 - 0.7
533,868 + 3.0
533,879 + -0.1
533,880 - 0.1
533,892 + 0.8
533,897 + -2.2
533,897 + 1.5
533,899 + 0.3
533,903 + 0.1
533,904 + 0.5
533,905 + 1.1
533,927 - 0.5
533,931 + 1.0
533,936 + 0.6
533,938 + -0.5
533,941 + -0.1
533,957 + -0.1
534,017 - 0.5
534,017 - -0.1
534,033 + 0.0
534,047 + 0.9
534,049 - 0.4
534,053 - 0.2
534,056 + -0.2
534,057 + -1.5
534,062 - 0.5
534,063 + -1.2
534,066 + 2.1
534,069 + -0.1
534,072 + -0.3
534,075 - 0.0
534,077 - 0.3
534,077 - -0.1
534,081 + 0.1
534,086 - 0.3
534,088 - 0.4
534,091 + -0.0
534,093 - 0.1
534,095 - 0.2
534,096 + 0.5
534,101 + -1.1
534,110 + 0.8