Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1905

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479057 to 480594 10272 mRNA_1905: 10273 - Hypothetical Protein, at 480800 to 481665 10273

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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479,861 + 10272 mRNA_1904 0.52 0.6
480,169 + 10272 mRNA_1904 0.72 -0.2
480,416 + 10272 mRNA_1904 0.88 0.4
480,691 - 0.8
480,696 + -0.2
480,706 + -0.0
480,715 + 1.6
480,723 + 0.4
480,820 + -1.8
480,831 - -0.5
480,841 + -0.5
480,841 + -0.4
480,857 + -0.3
480,905 + 10273 mRNA_1905 0.12 0.7
480,930 - 10273 mRNA_1905 0.15 -0.3
480,938 + 10273 mRNA_1905 0.16 -0.9
480,976 + 10273 mRNA_1905 0.20 1.7
480,982 - 10273 mRNA_1905 0.21 0.4
480,997 + 10273 mRNA_1905 0.23 0.6
481,054 + 10273 mRNA_1905 0.29 -0.3
481,093 + 10273 mRNA_1905 0.34 0.3
481,106 + 10273 mRNA_1905 0.35 0.8
481,107 - 10273 mRNA_1905 0.35 0.1
481,113 + 10273 mRNA_1905 0.36 -0.5
481,114 + 10273 mRNA_1905 0.36 0.6
481,129 - 10273 mRNA_1905 0.38 -1.4
481,132 + 10273 mRNA_1905 0.38 1.5
481,135 + 10273 mRNA_1905 0.39 -1.0
481,135 + 10273 mRNA_1905 0.39 0.2
481,158 + 10273 mRNA_1905 0.41 -0.7
481,170 - 10273 mRNA_1905 0.43 0.1
481,190 + 10273 mRNA_1905 0.45 0.6
481,202 + 10273 mRNA_1905 0.46 0.5
481,213 + 10273 mRNA_1905 0.48 -0.0
481,220 + 10273 mRNA_1905 0.48 -0.1
481,235 - 10273 mRNA_1905 0.50 -0.0
481,236 + 10273 mRNA_1905 0.50 0.4
481,244 + 10273 mRNA_1905 0.51 0.4
481,314 - 10273 mRNA_1905 0.59 1.6
481,315 + 10273 mRNA_1905 0.59 0.9
481,334 + 10273 mRNA_1905 0.62 1.1
481,378 - 10273 mRNA_1905 0.67 1.2
481,384 + 10273 mRNA_1905 0.67 0.1
481,399 - 10273 mRNA_1905 0.69 -1.2
481,403 - 10273 mRNA_1905 0.70 -1.0
481,425 - 10273 mRNA_1905 0.72 3.3
481,432 + 10273 mRNA_1905 0.73 0.0
481,439 + 10273 mRNA_1905 0.74 -1.1
481,453 - 10273 mRNA_1905 0.75 0.4
481,454 + 10273 mRNA_1905 0.76 0.2
481,455 - 10273 mRNA_1905 0.76 -1.2
481,458 + 10273 mRNA_1905 0.76 0.9
481,465 - 10273 mRNA_1905 0.77 0.6
481,468 + 10273 mRNA_1905 0.77 -0.3
481,469 + 10273 mRNA_1905 0.77 -0.2
481,485 + 10273 mRNA_1905 0.79 -0.6
481,489 - 10273 mRNA_1905 0.80 0.2
481,501 - 10273 mRNA_1905 0.81 -0.2
481,536 + 10273 mRNA_1905 0.85 0.5
481,549 - 10273 mRNA_1905 0.86 -0.7
481,609 + 0.6
481,613 + -0.7
481,620 + 0.0
481,631 - -1.4
481,636 + 0.5
481,646 + 1.4
481,662 + 2.5
481,679 + 0.7
481,695 + -0.4
481,697 + 0.5
481,719 - 0.3
481,733 - 0.7
481,770 + -1.4
481,772 + 0.3
481,816 + 1.0
481,816 + 0.4
481,819 + 0.4
481,826 - -1.0
481,829 + -0.2
481,830 - -1.6
481,832 - -0.0
481,842 - -0.8
481,853 + 0.7
481,857 - 0.0
481,859 + -0.3
481,864 - 0.9
481,866 - -1.3
481,867 + -0.2
481,867 - 0.2
481,869 + 1.0
481,869 - 0.2
481,870 - -0.4
481,873 - 1.0
481,880 + 0.3
481,881 + -0.3
481,882 + 4.1
481,890 - -0.1
481,890 + 2.8
481,893 + 0.3
481,895 - -0.8
481,896 + 0.5
481,897 - 0.3
481,897 + 0.3
481,897 + 0.5
481,898 + -0.8
481,898 + 2.6
481,900 + 0.9
481,903 - 0.9
481,904 - 2.0
481,905 - 0.1
481,909 + -0.1
481,909 + -0.7
481,910 + -0.7
481,915 + 0.4
481,916 + -0.4
481,918 + -0.0
481,920 + -0.4
481,920 - 0.0
481,921 + 0.3
481,926 + 0.6
481,948 + 2.6
481,950 - -1.3
481,952 + -2.2
481,990 - 1.0
482,010 - -1.5
482,010 - -1.2
482,037 - -0.6
482,141 + -1.8
482,152 - -0.1
482,167 + 0.2
482,173 + -0.1
482,180 - 0.2
482,220 - -0.8
482,221 + 0.0
482,222 - -0.9
482,235 + -1.2
482,375 + -0.2
482,379 + -0.5
482,382 + 0.2
482,386 - 0.3
482,387 - 0.2
482,391 + 1.8
482,395 - -0.2
482,397 + -0.6
482,418 - -0.1
482,435 + 0.7
482,435 + -2.0
482,439 + -1.0
482,442 - 0.8
482,443 + -0.7
482,444 - -0.3
482,445 - -0.3
482,445 + -0.6
482,446 + 0.5
482,447 - 1.6
482,449 + -1.5
482,450 + -0.1
482,451 - -0.0
482,451 - 1.3
482,456 - -1.1
482,458 - 0.9
482,461 - -0.1
482,464 + 0.7
482,464 + 0.5
482,471 + -0.0
482,472 - 0.2
482,473 + 0.3
482,474 - -1.2
482,474 + -0.1
482,475 + 1.5
482,481 - -0.2
482,483 - 0.7
482,484 + 0.2
482,485 - 1.0
482,490 - 0.3
482,490 - -1.4
482,492 + -0.1
482,494 - 0.6
482,494 - 1.1
482,495 - -0.1
482,495 - 0.7
482,507 - 0.1
482,509 + 0.7
482,524 - 2.2
482,635 - 1.0
482,653 - 1.9
482,654 - -1.4
482,659 - -1.2