Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1880

Experiments: Dropout Complete

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1879: 10247 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 423115 to 424156 10247 mRNA_1880: 10248 - KOG0254 Predicted transporter (major facilitator superfamily), at 424298 to 426105 10248 mRNA_1881: 10249 - K11770 SFH1 chromatin structure-remodeling complex subunit SFH1, at 426689 to 428081 10249

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Per-strain Table

Position Strand Gene Sysname Fraction Dropout Complete
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423,367 - 10247 mRNA_1879 0.24 -0.4
423,393 - 10247 mRNA_1879 0.27 0.6
423,670 + 10247 mRNA_1879 0.53 0.9
423,684 + 10247 mRNA_1879 0.55 2.8
423,933 + 10247 mRNA_1879 0.79 1.2
423,935 - 10247 mRNA_1879 0.79 1.4
423,939 - 10247 mRNA_1879 0.79 -0.5
423,981 + 10247 mRNA_1879 0.83 -1.0
424,131 - -0.0
424,314 - -2.5
424,586 - 10248 mRNA_1880 0.16 1.3
425,301 - 10248 mRNA_1880 0.55 2.2
425,436 + 10248 mRNA_1880 0.63 0.3
425,747 - 10248 mRNA_1880 0.80 -0.7
426,016 - -0.7
426,195 - -0.2
426,321 - 1.9
426,326 + -1.3
426,340 + -1.2
426,344 + -0.3
426,395 - -0.3
426,397 - 0.1
426,446 - -0.4
426,465 + -1.2
426,466 + 1.2
426,473 + -0.5
426,475 - 0.1
426,476 + -0.3
426,481 + 0.0
426,487 - 0.7
426,488 + -1.5
426,489 - -0.3
426,491 + 0.1
426,494 + 0.4
426,496 + 0.4
426,496 + 1.3
426,496 + 2.4
426,497 + 1.6
426,497 + -0.1
426,527 - 0.1
426,529 - -1.1
426,532 + -1.4
426,532 + 0.1
426,638 + 0.1
426,703 + -1.7
426,728 + 2.2