Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1578

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1577: 9945 - K03844 ALG11 alpha-1,2-mannosyltransferase, at 637857 to 639925 9945 mRNA_1578: 9946 - K20237 NUD1 protein NUD1, at 640262 to 646467 9946

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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640,037 + 1.8
640,043 - -0.9
640,045 + 1.3
640,045 + -1.1
640,051 + 0.5
640,051 - 1.7
640,056 + 1.1
640,057 + -0.2
640,059 + -0.6
640,061 + 0.6
640,062 - -0.7
640,153 - 0.4
640,191 - -0.1
640,335 - -0.7
640,338 + 0.4
640,557 - 0.4
640,784 - 1.8
640,802 - -2.0
640,802 - 0.8
640,909 + 9946 mRNA_1578 0.10 0.3
640,909 + 9946 mRNA_1578 0.10 0.6
640,910 - 9946 mRNA_1578 0.10 -0.9
640,912 - 9946 mRNA_1578 0.10 0.8
640,913 - 9946 mRNA_1578 0.10 0.7
640,914 + 9946 mRNA_1578 0.11 -0.4
640,914 + 9946 mRNA_1578 0.11 0.5
640,977 + 9946 mRNA_1578 0.12 0.5
641,022 + 9946 mRNA_1578 0.12 -0.2
641,055 - 9946 mRNA_1578 0.13 0.2
641,060 + 9946 mRNA_1578 0.13 1.0
641,717 - 9946 mRNA_1578 0.23 0.4
641,816 - 9946 mRNA_1578 0.25 0.2
641,971 + 9946 mRNA_1578 0.28 1.0
642,146 + 9946 mRNA_1578 0.30 0.2
642,472 - 9946 mRNA_1578 0.36 -0.3
642,529 - 9946 mRNA_1578 0.37 1.9
642,585 + 9946 mRNA_1578 0.37 -1.7
642,854 - 9946 mRNA_1578 0.42 -2.0
642,872 - 9946 mRNA_1578 0.42 -0.5
643,584 + 9946 mRNA_1578 0.54 2.2
643,720 + 9946 mRNA_1578 0.56 0.5
643,991 - 9946 mRNA_1578 0.60 -0.9
644,194 - 9946 mRNA_1578 0.63 0.2
644,288 + 9946 mRNA_1578 0.65 0.4
644,312 - 9946 mRNA_1578 0.65 -0.5
644,352 - 9946 mRNA_1578 0.66 0.9
644,652 - 9946 mRNA_1578 0.71 -1.1
644,770 - 9946 mRNA_1578 0.73 -0.1
644,784 - 9946 mRNA_1578 0.73 1.7
644,785 + 9946 mRNA_1578 0.73 0.4
644,786 - 9946 mRNA_1578 0.73 0.8
644,950 - 9946 mRNA_1578 0.76 0.4
644,979 + 9946 mRNA_1578 0.76 0.1
645,017 - 9946 mRNA_1578 0.77 0.6
645,068 + 9946 mRNA_1578 0.77 -0.1
645,124 - 9946 mRNA_1578 0.78 0.6
645,354 - 9946 mRNA_1578 0.82 -1.8
645,475 - 9946 mRNA_1578 0.84 -0.7
645,616 + 9946 mRNA_1578 0.86 -0.5
645,732 - 9946 mRNA_1578 0.88 -1.5
645,980 + -0.6
645,999 - -0.2
646,188 + 0.1
646,275 + 0.5
646,278 - 0.1
646,319 + -0.0
646,459 + -0.5
646,466 + 0.7
646,707 - -0.8
647,038 - 1.9
647,073 + -0.1
647,141 + -0.7
647,328 - -0.3
647,344 + -0.5