Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1486

Experiments: YNB Glucose 75mM Arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1485: 9853 - HMMPfam-WW domain-PF00397,ProSitePatterns-WW/rsp5/WWP domain signature.-PS01159,ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 412872 to 413936 9853 mRNA_1486: 9854 - K11085 msbA ATP-binding cassette, subfamily B, bacterial MsbA, at 414021 to 419409 9854 mRNA_1487: 9855 - K01883 CARS, cysS cysteinyl-tRNA synthetase, at 420051 to 423071 9855

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
remove
413,277 - 9853 mRNA_1485 0.38 1.3
413,446 - 9853 mRNA_1485 0.54 1.7
413,574 - 9853 mRNA_1485 0.66 2.2
413,645 + 9853 mRNA_1485 0.73 -0.0
413,710 + 9853 mRNA_1485 0.79 0.2
413,843 - 0.0
413,907 + -1.0
414,189 - 1.6
414,190 + -1.8
414,242 + -1.9
414,471 + 0.2
414,871 - 9854 mRNA_1486 0.16 -0.1
415,018 + 9854 mRNA_1486 0.19 0.3
415,042 + 9854 mRNA_1486 0.19 -0.3
415,049 - 9854 mRNA_1486 0.19 -0.0
415,203 + 9854 mRNA_1486 0.22 0.2
415,322 - 9854 mRNA_1486 0.24 0.3
415,467 - 9854 mRNA_1486 0.27 -0.0
415,496 - 9854 mRNA_1486 0.27 -0.0
415,509 + 9854 mRNA_1486 0.28 -1.3
415,539 + 9854 mRNA_1486 0.28 0.1
415,545 - 9854 mRNA_1486 0.28 0.3
415,705 - 9854 mRNA_1486 0.31 0.8
415,912 + 9854 mRNA_1486 0.35 1.9
415,938 - 9854 mRNA_1486 0.36 0.8
415,943 - 9854 mRNA_1486 0.36 1.0
416,025 - 9854 mRNA_1486 0.37 1.6
416,067 + 9854 mRNA_1486 0.38 -1.0
416,215 - 9854 mRNA_1486 0.41 1.3
416,392 + 9854 mRNA_1486 0.44 -1.2
416,529 - 9854 mRNA_1486 0.47 -0.1
416,530 + 9854 mRNA_1486 0.47 -0.0
416,690 + 9854 mRNA_1486 0.50 -0.2
416,730 - 9854 mRNA_1486 0.50 0.1
416,743 - 9854 mRNA_1486 0.51 1.3
416,754 + 9854 mRNA_1486 0.51 0.7
417,131 + 9854 mRNA_1486 0.58 -0.1
417,184 + 9854 mRNA_1486 0.59 -0.1
417,268 + 9854 mRNA_1486 0.60 -0.4
417,301 - 9854 mRNA_1486 0.61 0.5
417,366 - 9854 mRNA_1486 0.62 -0.6
417,812 + 9854 mRNA_1486 0.70 2.5
417,931 + 9854 mRNA_1486 0.73 0.4
417,984 + 9854 mRNA_1486 0.74 0.5
418,175 - 9854 mRNA_1486 0.77 0.0
418,283 - 9854 mRNA_1486 0.79 -0.3
418,345 + 9854 mRNA_1486 0.80 -0.2
418,634 - 9854 mRNA_1486 0.86 -0.9
418,790 + 9854 mRNA_1486 0.88 -1.8
418,828 - 9854 mRNA_1486 0.89 1.0
419,060 + 1.8
419,064 - 0.5
419,129 - 0.7
419,222 + 0.6
419,388 - 2.6
419,393 + 2.9
419,479 - 0.2
419,488 + 2.1
419,532 - 1.4
419,537 - 2.2
419,545 + 0.9
419,682 - 0.5
419,702 + 1.4
419,785 + 0.2
419,840 + -0.5