Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1293

Experiments: YNB Glucose 75mM Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1292: 9660 - K10848 ERCC4, XPF DNA excision repair protein ERCC-4, at 846383 to 850419 9660 mRNA_1293: 9661 - Hypothetical Protein, at 850858 to 851999 9661 mRNA_1294: 9662 - K20369 ERV29, SURF4 ER-derived vesicles protein, at 852831 to 853984 9662

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Arginine
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849,896 - 9660 mRNA_1292 0.87 -0.2
850,122 - 0.8
850,141 - 2.5
850,148 + -0.2
850,290 - 1.1
850,299 + 1.1
850,307 + 0.2
850,325 - 0.9
850,344 + 0.1
850,420 + -1.2
850,487 + 1.1
850,546 - 1.7
850,602 - 0.2
850,740 - 0.0
850,743 - 0.0
850,744 - 3.2
850,884 + 0.7
850,936 + -0.2
851,035 + 9661 mRNA_1293 0.15 -0.3
851,206 - 9661 mRNA_1293 0.30 -0.8
851,531 + 9661 mRNA_1293 0.59 1.7
851,656 + 9661 mRNA_1293 0.70 -1.3
851,730 + 9661 mRNA_1293 0.76 3.1
851,768 - 9661 mRNA_1293 0.80 -1.2
851,859 - 9661 mRNA_1293 0.88 -0.8
851,863 - 9661 mRNA_1293 0.88 1.4
851,882 - 9661 mRNA_1293 0.90 -0.3
851,891 - 1.7
851,897 + 0.2
851,900 + 0.0
851,906 - 0.2
851,914 - 0.4
851,917 + 0.2
852,137 - 0.2
852,277 - 0.2
852,338 - -1.1
852,343 + 0.5
852,353 + 1.2
852,356 + 2.4
852,359 + -0.6
852,362 + -0.5
852,372 + 0.2
852,490 - 0.4
852,492 + 1.2
852,501 - -0.1
852,510 - 1.4
852,637 - 0.3
852,925 - 2.0